Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0918 ATGGCGAACGATACAAATCTGGAGCAATTCATGGTAAATTCCAAAGGTCTCAAGAGGGAACATGCAAATGTTGACGCCCAATCTCATACCGGTGGGCCCCACGGTCTAAACCAACCCGATACAAACCGGAATCTGGTTCAGTTTCCGGCTAATAAGAGGTCGAAGTCGTCCGGTTCATTGCATGAGAACCAGAATGGACCACTGGAGAAGAACGAGGAGGAGGCAAAGAGCGAAGTGGTGGACATTGAAATTGTGAGCGAGAATGAAGAACCCAGAACTGGTTTTGTCTCCAAGACTGCTTCTACCTCGAAAAAGGTCCCGTCTTGGAAGCTGAAGGATCTTCTAGCCTCAGGGATTCTTGAGGGAATGACAGTGCATTATATCAAAGGAAAAAGAGCAAAGAAGCAAGAAGGCACAAGGCTTGAGGGAGTGATTAGAGGCACTGGGATTGAGTGTTCTTGTGAAATTTGTAAAGGGAATGGGGTTGTGGGAGTCACAGTTTTTGAGAAGCATGCTGATAGTGGACATAAACGCCCAGCAGAGTATATTCATCTTGAGAATAAGAAAACTCTCTGTGATGTCATGAATGCATGTTCAGACATTCCATTAGCCAATTTGGAGGAAGCTGTCCAAAACGTCCTTGCAGGGCTAACTATGCAGAAATCTACCTTCTGTTTTAACTGCAGAGGTTCTTTTAAAGATGATGAAGCTGTGTCGAAACTATTATGCAATTCATGCACGACATTGAAGGACTGTCCGCCCAGCCCCACTCCAACAACTGAGAATAGCAATACATGTGTTTCACCATCAGTTGAATCCAGATCCCCAAAACCAGATGTGCGTCCAAAGGGAATGAAACAAACACCATCTCATGGAAAGAATCTAGAACAACTAACTAAGACAAGGGATCTACAAATGCACAAGGCAGTATTTGGTGAATTGGCTGAGGGAGCTGAACTATCCTATCGTGCTCATGGAAAGAAACTATTGGTTGGTCACAAAGTGGGAAATGGAATTCGTTGCACCTGTTGTAACACTGTGGTCAGCCCTTCTCGGTTTGAAGCACATGCTGGTTGTGCATCACGACGGAAACCCTATCTGCAGATATATACATCTAATATGGTTTCACTCCATCAGTTGTCCATTGATCTTTTAAAAAAGCGGAGTCTTTCTACCAAGGAACATGTTGATCTCTGCAGTTTATGTTCAAATGGAGGGGATCTTATCAGTTGTGATCGTGATAAATGCACAAGAGCTTTTCACCTAAAATGTGCTCGTCTTCCTCGTATACCAAGTGGTTTGTGGTACTGCAAATATTGTGAGAATGAAACTCAGGAAAACAAAGATGTGGACCAGGGGAGAAGCTTTTTAGTCGAACATGATGAGGGCGGCCAGTGTGCATTGTGCGGTGGCCATGATTTCATCAAAGACGTCTTTGGTCCTCGGACAGTAATGATTTGTGATCAGTGTGAGAAGGAATACCATGTCGAGTGCTTGAAGGATCATAACAAGCAGAACCTAGAGAAATTACCGGAAGGTAAATGGTTCTGTTGCTCAGATTGTGATCATATTCATAACGTTCTGGTAAAATATGTGGCTCGTGGGGAGATGAATCTTCCAGATTCCCTCCTAAGTTTGATTGAAAAGAAGCCTGAAGAAAAAGGCATAGAAAGTGAGGCTGGTCTTGATATAAAATGGAGGGTTTTTAACGAGAATTTGGTTGATCATAATGAGACTATGTCATTGTTTTCAAACGTTGATGATATCTTCCATGAGCAGTTTGGTCCAATAGTTAATCCTACTACAGCGGGTGATTTCATTGAGGAAATGCTTTACGGAAAGAAAGTCAAGGATCATGATTTTCGCGGAATGTATTGTGCAGTGCTCACTATCAACCAAATGGTGGTTTGTGCTTGTCTATTTCGTGTGTTTGGGCAAGAAGTAGCAGAGCTTCCCTTAGTGGCAACTCGTAAAGATTACCAAAGAAAGGGTTACTTTCGGTCCCTGTTCTCTTGCATTGAAAGGATGTTAGGATGTTTAAAGGTGAAAAACTTTGTCCTACCAGCGACGAGGGAAGCTAAGTCGCTATGGACCACCAAATTTGGGTTCTCAAGGCTGGGTAGAGAGAAGATAAACAACTACCAAAAATACAACAACATAATGGCATTTAAGGGAACATTGTTTCTCCAGAAGCCTATTCCTCAACTACAAAAAATACAACAACATAGTAGCATTTCAAGGAACATTCTTTCTCTAGAAGCATATTCCTGTGCTGAAATGAGGGCCTAA 2289 0.4264 MANDTNLEQFMVNSKGLKREHANVDAQSHTGGPHGLNQPDTNRNLVQFPANKRSKSSGSLHENQNGPLEKNEEEAKSEVVDIEIVSENEEPRTGFVSKTASTSKKVPSWKLKDLLASGILEGMTVHYIKGKRAKKQEGTRLEGVIRGTGIECSCEICKGNGVVGVTVFEKHADSGHKRPAEYIHLENKKTLCDVMNACSDIPLANLEEAVQNVLAGLTMQKSTFCFNCRGSFKDDEAVSKLLCNSCTTLKDCPPSPTPTTENSNTCVSPSVESRSPKPDVRPKGMKQTPSHGKNLEQLTKTRDLQMHKAVFGELAEGAELSYRAHGKKLLVGHKVGNGIRCTCCNTVVSPSRFEAHAGCASRRKPYLQIYTSNMVSLHQLSIDLLKKRSLSTKEHVDLCSLCSNGGDLISCDRDKCTRAFHLKCARLPRIPSGLWYCKYCENETQENKDVDQGRSFLVEHDEGGQCALCGGHDFIKDVFGPRTVMICDQCEKEYHVECLKDHNKQNLEKLPEGKWFCCSDCDHIHNVLVKYVARGEMNLPDSLLSLIEKKPEEKGIESEAGLDIKWRVFNENLVDHNETMSLFSNVDDIFHEQFGPIVNPTTAGDFIEEMLYGKKVKDHDFRGMYCAVLTINQMVVCACLFRVFGQEVAELPLVATRKDYQRKGYFRSLFSCIERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKYNNIMAFKGTLFLQKPIPQLQKIQQHSSISRNILSLEAYSCAEMRA* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0918 762 SUPERFAMILY FYVE/PHD zinc finger 460 519 IPR011011 -
Lja3g0918 762 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 580 713 IPR016181 -
Lja3g0918 762 MobiDBLite consensus disorder prediction 252 272 - -
Lja3g0918 762 SUPERFAMILY FYVE/PHD zinc finger 373 442 IPR011011 -
Lja3g0918 762 SMART PHD_3 465 522 IPR001965 -
Lja3g0918 762 SMART PHD_3 398 441 IPR001965 -
Lja3g0918 762 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 272 739 - -
Lja3g0918 762 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 55 255 - -
Lja3g0918 762 ProSiteProfiles Zinc finger PHD-type profile. 396 443 IPR019787 -
Lja3g0918 762 ProSitePatterns Zinc finger PHD-type signature. 399 440 IPR019786 -
Lja3g0918 762 PANTHER AUTOIMMUNE REGULATOR 272 739 - -
Lja3g0918 762 PANTHER AUTOIMMUNE REGULATOR 55 255 - -
Lja3g0918 762 MobiDBLite consensus disorder prediction 30 65 - -
Lja3g0918 762 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 571 734 IPR000182 GO:0016407
Lja3g0918 762 MobiDBLite consensus disorder prediction 1 77 - -
Lja3g0918 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 524 IPR013083 -
Lja3g0918 762 Gene3D - 562 731 - -
Lja3g0918 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 462 IPR013083 -
Lja3g0918 762 Pfam Tify domain binding domain 143 198 IPR032308 -
Lja3g0918 762 Pfam Tify domain binding domain 336 381 IPR032308 -
Lja3g0918 762 MobiDBLite consensus disorder prediction 252 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0918 Lja-Chr3 9345979 9350592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0918 94 738 PHD Transcription Factor Family AT3G53680 36.035 1.36e-139 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0918 - - lja:Lj3g3v3031030.1 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0918 3 9345979 9350592 Lja3g0918 3 9345979 9350592 ECH
Lja3g3658 3 72663890 72670709 Lja3g0918 3 9345979 9350592 PCT