Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0912 ATGGTAGAAGAACAACAATTTTTGCTGGGGATGGCGACCCCCAGCATCCACACAGGGAAGGGAAAACGCACCAAGAGGTTGAGGCTATTATCCCCCTGTGGTGGTGTCGCGGCCACCGTGACGGCGTCTAGCTGCTCCAGCGTTTCTGGCGGTGATAACATGTCGTTTTCTTCGTCGATGGAGAGCGCTGATCGGGAGGAGGAAGACATGGCTAATTGCTTGATCCTCCTTGCTCAAGGAGGAGGATCTCAATCTCATCATCAACATCATCATCACAAGAAACAACAACCTGAAAATTATGATGAAGGTGAAAAAACAGAAAAGGGAAACACCGCCAGTAAAATGTTTGCTGAGATAGCCACCGCCACAAATCCCAATACCAAAGCTGGTTTCTTTATTTATGAATGCAAAACGTGTAACCGAACATTCCCTTCGTTTCAAGCACTTGGTGGGCACAGGGCGAGTCACAAGAGGCCTAAAGTCACGGTGGAGGAGAAGAAACTATCTCCACCTCTACCGCCTCCGCCGTCTTCACAACCACACCAGCTGGTTGTGAATTACGGCGGATTTGAAGAAGCAGGGCTACCACGTGGTGGTGGCCCTTCAATTTCTCTTCAATTGGGGAGATCAGGTTTCAATGGCAATAATAACAAGGCCAAGATTCATGAGTGTTCCATTTGTGGATCAGAATTCACATCAGGACAAGCATTGGGTGGTCACATGAGGAGGCACAGGGCATCCGCCAACGCGGCCGCCGAGACTAATTCTAACGCTATCACCTCCACCACCGTCGTTGCTCGGCCGCCTAGAAATATTTTACAATTAGATCTGAACCTTCCGGCACCGCCCGAAGATGATCTCCGAGAATCAAAGTTTCAGTTTCCGGCAACTCAGAAATCAATGGTGCTGTCTGCTGCTCCGGCTTTGGTGGATTGCCATTATTAG 945 0.4942 MVEEQQFLLGMATPSIHTGKGKRTKRLRLLSPCGGVAATVTASSCSSVSGGDNMSFSSSMESADREEEDMANCLILLAQGGGSQSHHQHHHHKKQQPENYDEGEKTEKGNTASKMFAEIATATNPNTKAGFFIYECKTCNRTFPSFQALGGHRASHKRPKVTVEEKKLSPPLPPPPSSQPHQLVVNYGGFEEAGLPRGGGPSISLQLGRSGFNGNNNKAKIHECSICGSEFTSGQALGGHMRRHRASANAAAETNSNAITSTTVVARPPRNILQLDLNLPAPPEDDLRESKFQFPATQKSMVLSAAPALVDCHY* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0912 314 MobiDBLite consensus disorder prediction 150 183 - -
Lja3g0912 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Lja3g0912 314 ProSitePatterns Zinc finger C2H2 type domain signature. 224 244 IPR013087 -
Lja3g0912 314 SUPERFAMILY beta-beta-alpha zinc fingers 134 244 IPR036236 -
Lja3g0912 314 Gene3D Classic Zinc Finger 132 244 - -
Lja3g0912 314 SMART c2h2final6 222 244 IPR013087 -
Lja3g0912 314 SMART c2h2final6 134 156 IPR013087 -
Lja3g0912 314 MobiDBLite consensus disorder prediction 80 107 - -
Lja3g0912 314 PANTHER ZINC FINGER PROTEIN ZAT5 19 314 - -
Lja3g0912 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 249 IPR013087 -
Lja3g0912 314 Pfam C2H2-type zinc finger 134 159 - -
Lja3g0912 314 Pfam C2H2-type zinc finger 222 246 - -
Lja3g0912 314 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 19 314 - -
Lja3g0912 314 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0912 Lja-Chr3 9302024 9303694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0912 20 314 C2H2 Transcription Factor Family AT2G28200 41.693 4.11e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0912 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0912 - - lja:Lj3g3v3033150.1 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0912 3 9302024 9303694 Lja3g0912 3 9302024 9303694 ECH
Lja3g0912 3 9302024 9303694 Lja5g1038 5 10534347 10535561 ECH
Lja3g0912 3 9302024 9303694 Lja1g0801 1 7753281 7754424 ECH
Lja3g0912 3 9302024 9303694 Lja3g3662 3 72717791 72718988 ECH
Lja1g0801 1 7753281 7754424 Lja3g0912 3 9302024 9303694 ECH
Lja3g3662 3 72717791 72718988 Lja3g0912 3 9302024 9303694 PCT