Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0909 ATGGTCACAATGGATTTTCATCAACAGAATCAGAATCTAGCGCATGTTAATGACTTTGAACTGCACAGCTTCGTGGAAGATCCCAACTTTGATCAGTTTATCAATATGATTCGTGGGGAGAATGAAGCTGCTGCTATCTGTGACTTCAATTCTGACATTTTGAATGGTTACTATGTTGATAACACATTCCACTCATTCCCTGCAAACCAATTTGATCAATGCAATAGTAACAATTCTGTGAGAGTTTATGATCCTAGCTCAACACTTAGCTCCTTGTCATGTTTTGATGAAGAAGCCAAATGGGGAGGAGAAGAAGAAAATGATGGGGAGGATTCTTCTTCTGCTGGAACAACCTCCACCATGGAAACAAAGATTGTTAATGGTAAGTCAAGGCCAAAAACTGATAGGTCCAAGACTTTGATCTCTGAGAGGAGGAGGAGAGGACGAATGAAGGAGAAGCTTTATGCATTGCGTGCCTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTTTCATATGTGTATGATCTTCAAGCACAAGCCAAGAAGCTAAAGACTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTCTCCCAAAATTATCAAGCAACAATTGAAAGCCCCATGAAGGTTCAATCCACTGACCACAGCAGTTCCATCTGCAAGAGGATCACACAGATGGACATCTTTCAAGTGGATGAAACAGAGCTCTATGTGAAAATAGTATGCAACAAGGGAGAAGGTGTAGCTGCCTCATTGTACAAGTCTCTTGAATCTCTCACAGGCTTCCATGTTCAGAATTCAAACTTGAACACAGTTTCTGAGTGTTTTCTACTTAAATTTTCTTTAAATGTGAAAGGTTCTAAGCCAGAAATAAACTTGCCCAATTTGAAGCTGTGGGTGACTAGCGCTTTTCTGAACCAAGGCTTTGAATTCATACCTTCTTTTCAGGCCTGA 975 0.4072 MVTMDFHQQNQNLAHVNDFELHSFVEDPNFDQFINMIRGENEAAAICDFNSDILNGYYVDNTFHSFPANQFDQCNSNNSVRVYDPSSTLSSLSCFDEEAKWGGEEENDGEDSSSAGTTSTMETKIVNGKSRPKTDRSKTLISERRRRGRMKEKLYALRALVPNITKMDKASIIGDAVSYVYDLQAQAKKLKTEVAGLEASLLVSQNYQATIESPMKVQSTDHSSSICKRITQMDIFQVDETELYVKIVCNKGEGVAASLYKSLESLTGFHVQNSNLNTVSECFLLKFSLNVKGSKPEINLPNLKLWVTSAFLNQGFEFIPSFQA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0909 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Lja3g0909 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 199 IPR036638 GO:0046983
Lja3g0909 324 MobiDBLite consensus disorder prediction 100 144 - -
Lja3g0909 324 Pfam Helix-loop-helix DNA-binding domain 141 184 IPR011598 GO:0046983
Lja3g0909 324 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 15 320 - -
Lja3g0909 324 SMART finulus 140 189 IPR011598 GO:0046983
Lja3g0909 324 Coils Coil 180 200 - -
Lja3g0909 324 MobiDBLite consensus disorder prediction 112 127 - -
Lja3g0909 324 MobiDBLite consensus disorder prediction 128 144 - -
Lja3g0909 324 Gene3D - 127 200 IPR036638 GO:0046983
Lja3g0909 324 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 15 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0909 Lja-Chr3 9260349 9262692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0909 13 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.686 9.78e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g0909 HLH 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0909 - - gmx:100805451 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0909 3 9260349 9262692 Lja3g0909 3 9260349 9262692 ECH
Lja3g3664 3 72744064 72745975 Lja3g0909 3 9260349 9262692 PCT