Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0908 ATGGAAACAAAGACAGAGCTTGTTTCATCATCTTCTTCTTCTTCTCTCATCACAGATTCTTCTGAATCTAGCATAAACAACTCTTCTATGGAACTTGGAATTGAGGATTTTGGCTGCACACATTACAGAAGAAAATGCAGGATCAGAGCACCTTGTTGTGATGAGGTTTTTGATTGTAGGCATTGCCATAATGAAGCTAAGAACTCTGAGGAGATTAAACCTCTGGATCGTCATGATATCCCACGCCATGAAATTGAAAAGGTCATCTGCTCCTTATGTGATACAGAACAAGATGTTCAACAGTACTGCATAAATTGTGGAGTATGCATGGGCAAGTACTTTTGTGCTACATGCAAATTCTTTGACGATGATATTTCAAAAAACCAATACCATTGTGATGAATGTGGCATCTGCAGAATTGGAGGCAAGGATAACTTTTTCCATTGCAAGAGATGTGGATGTTGCTACACCAAGGAAATGGAAAAGGGGCATCATTGTGTAGAAAAAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTATTTGATACATTGAAAGATATTACAGTCTTACCTTGCGGGCATACAATACATTTAGAGTGTGTTAAAGAGATGGAAAAACATCATAGGTTCACATGTCCTGTTTGTTCAAAATCCATATGTGACATGTCAAGTTTGTGGAAGAAGCTTGACCAAGTGGTTGCCTCAACTCCAATGCCTGAAACATACAGAAATAAGATGATTTGGATACTTTGCAATGATTGTGGAGTAAACTCCAATGTGCAATTCCACATTGTGGCGCATAAGTGCTTAAGTTGCAACTCATACAACACAAGGCAGATACAAGGAACACCTTCTACATCATGTTCATCTATGGTTTCTGAGATGGTGAGATGA 900 0.3867 METKTELVSSSSSSSLITDSSESSINNSSMELGIEDFGCTHYRRKCRIRAPCCDEVFDCRHCHNEAKNSEEIKPLDRHDIPRHEIEKVICSLCDTEQDVQQYCINCGVCMGKYFCATCKFFDDDISKNQYHCDECGICRIGGKDNFFHCKRCGCCYTKEMEKGHHCVEKAMHHNCPVCFEYLFDTLKDITVLPCGHTIHLECVKEMEKHHRFTCPVCSKSICDMSSLWKKLDQVVASTPMPETYRNKMIWILCNDCGVNSNVQFHIVAHKCLSCNSYNTRQIQGTPSTSCSSMVSEMVR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0908 299 Pfam Zinc-ribbon 222 280 IPR039512 -
Lja3g0908 299 SUPERFAMILY RING/U-box 173 223 - -
Lja3g0908 299 ProSiteProfiles Zinc finger RING-type profile. 175 218 IPR001841 -
Lja3g0908 299 SUPERFAMILY Zinc hairpin stack 111 168 IPR037275 -
Lja3g0908 299 Gene3D - 248 288 - -
Lja3g0908 299 Pfam CHY zinc finger 39 120 IPR008913 GO:0008270
Lja3g0908 299 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0908 299 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 294 - -
Lja3g0908 299 SMART ring_2 175 217 IPR001841 -
Lja3g0908 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 247 IPR013083 -
Lja3g0908 299 ProSiteProfiles Zinc finger CHY-type profile. 32 108 IPR008913 GO:0008270
Lja3g0908 299 Pfam RING-type zinc-finger 175 215 IPR027370 -
Lja3g0908 299 SUPERFAMILY CHY zinc finger-like 37 110 IPR037274 GO:0008270
Lja3g0908 299 ProSiteProfiles Zinc finger CTCHY-type profile. 110 174 IPR017921 -
Lja3g0908 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 23 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0908 Lja-Chr3 9250861 9253954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0908 37 283 C2H2 Transcription Factor Family AT3G18290 39.921 3.43e-56 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0908 K10144 - gmx:100812709 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0908 3 9250861 9253954 Lja3g0908 3 9250861 9253954 ECH