Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0905 ATGATCCATTTCCGTCCTTACCTCTCTCCCCCATTCTTATCTCATCATCGAATCACCGCCGTCAAGCTTTTCTCTCTTCCCTTTCTCACCCTCCCTCGCCGCGCCATGTCCAAACCACCCTCCGCCTTCGACGCCCTAATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAGAAACCACCTCCACCTTCCGCCGCATCCCCCAAGAAACGAAAATCCCCTCACTCCTCCCCAGCCCCCGCCCCCACCCTAAACCCTAACAACCTCAAAACCCCCGAAACCGTTCAACCGCCTAGGGATTCAGTTGAAACCGTTCAACCGTCATCGGAAGAAGCCGTTGAAACTGTGCTTCAACCGGCGAAGAAGATTTGCAACAGCAGCGGGTCTTTGATCGCCGAGTTGAAGGAGCTGGCCCCGAGGCTCAAGAAGAAGCCGTCGGAGTTCGATCCGAGTACTGTGGTTTGCTGGGAGAAGGGAAAACCCGTGCCGTTCCTGTTCTTGTGCTTGGCGTTTGACATGATTGACAAGGAGTCAGGGAGGATTGTGATCACGGACATTGCGTGCAACCTTCTGAGAACGGTCATACACGCTACGCCGGAGGATCTTGTGCCGGTGGTCTATTTCCTTGCGAATAGGATTGCTCCGGCGCATGAAGGGTTGGAATTGGGAATTGGTGATGCTTCCATTATCAAGGCGCTCGCGGAGTCTTGTGGAAGGACTGAGTCGCAGATTAGGAAGCTGAATAAGGATAGAGGTGATTTGGGATTGGTCGCCAAAGAGTGCCGTTCATCTCAGTCAATGATGCGGAAGCCTGATGCATTGACTATAAGGAAGGTTTTCACGATCTTTCGCCTCATTGCCAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCATATAAAGTCTCTTCTTGTTGCTGCAACTGACTGTGAACCTATATATCTAATTCGTTTGTTACAGACAAAGTTGCGAATTGGATTAGCTGAACAAACTCTCTTAGCTTCATTAGGGCAGGCTGCAGTGTACACTGAAGAACATTCTAAACCACCTCCTGAAATTCAGTCTCCTCTAGAAGAGGCTGCAAAAATCGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAGTACTGTCTTCACTGCTTAAGGATGGTGTGTGGAAACTTCCAAAGACATGTAAATTTACTCTTGGTGTTCCTGTCGGGCCTATGCTTTCCAAACCAACCAAGGGTGTATCTGAAATTCTGAATAAATTCCAGGATGTAGAGTTTACCTGTGAATACAAATACGACGGAGAGCGTGCTCAGATACATTACATGGAGAATGGCTCAGTTGAAGTTTACAGCAGAAATGCAGAATGGAATACTGGAAAGTTTCCTGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAACAAGTGTATCATCATTTGTTCTTGATTGTGAAGTTGTTGCATATGACCGTGCAAAACAAAGAATCCTTCCTTTTCAGGTGCTTAGTACTCGGGCTCGCAAAAATGTAGCTGTGAGTGACATAAAGGTTGATGTTTGCATATTTGCCTTTGATTTGTTGTATCTTAATGGTCAAATACTTCTTCAGGAAAACTTGAAAACTCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAATCTGGATATTTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAGATACAGAAGTTTCTTGACAAAGCCATTGGTGCAAGTTCTGAGGGATTAATCATTAAAACATTAAATGAAGATGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGATAATATAGGAGACTCACTAGATTTAGTTCCTATTGCTGCTTTTCACGGTCGTGGGAAACGTACAGGAGTCTATGGTGCCTTTCTCCTTGCTTGCTATGACAACAGTAATGAAGAATTTCAAAGTATTTGTAAGATTGGAACTGGATTCTCTGAAGATGTTCTTATAGAGCGTTCTAAAGGCCTCCAGACTAAAGTCATTCCGAAGCCAAAGGCCTACTATCGGTATGCAGAAACAATAAATCCTGATGTTTGGTTTGAAGCCAGTGAGGTGTGGGAGGTGAAGGCTGCAGACCTGACTATTAGCCCCGTTTATCGAGCTGCAGTGGGTATTGTAGATTCAAACAAGGGCATATCTCTTCGATTTCCACGCCTACTTCGAGTACGGCCTGACAAAGATCCTGAGCAGGCCACATCGTCTGAGCAGGTTGCTGAAATGTATAATGCTCAGAAACACAATCAAACGGACAACCAAAATGACAATGAAGATGATTGA 2331 0.4522 MIHFRPYLSPPFLSHHRITAVKLFSLPFLTLPRRAMSKPPSAFDALMSGARAAAAKKKPPPPSAASPKKRKSPHSSPAPAPTLNPNNLKTPETVQPPRDSVETVQPSSEEAVETVLQPAKKICNSSGSLIAELKELAPRLKKKPSEFDPSTVVCWEKGKPVPFLFLCLAFDMIDKESGRIVITDIACNLLRTVIHATPEDLVPVVYFLANRIAPAHEGLELGIGDASIIKALAESCGRTESQIRKLNKDRGDLGLVAKECRSSQSMMRKPDALTIRKVFTIFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPIYLIRLLQTKLRIGLAEQTLLASLGQAAVYTEEHSKPPPEIQSPLEEAAKIVKQVYSVLPDYDKVLSSLLKDGVWKLPKTCKFTLGVPVGPMLSKPTKGVSEILNKFQDVEFTCEYKYDGERAQIHYMENGSVEVYSRNAEWNTGKFPDVVAAVSRLKKTSVSSFVLDCEVVAYDRAKQRILPFQVLSTRARKNVAVSDIKVDVCIFAFDLLYLNGQILLQENLKTRREHLYASFEEESGYFQFATAITSNDVEEIQKFLDKAIGASSEGLIIKTLNEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNSNEEFQSICKIGTGFSEDVLIERSKGLQTKVIPKPKAYYRYAETINPDVWFEASEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRLLRVRPDKDPEQATSSEQVAEMYNAQKHNQTDNQNDNEDD* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0905 776 ProSitePatterns ATP-dependent DNA ligase signature 2. 582 608 IPR016059 GO:0003909
Lja3g0905 776 Gene3D - 613 775 IPR012340 -
Lja3g0905 776 Pfam DNA ligase N terminus 162 337 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja3g0905 776 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 62 776 - -
Lja3g0905 776 SUPERFAMILY Nucleic acid-binding proteins 616 762 IPR012340 -
Lja3g0905 776 Gene3D - 414 612 - -
Lja3g0905 776 CDD OBF_DNA_ligase_I 616 761 - -
Lja3g0905 776 MobiDBLite consensus disorder prediction 751 767 - -
Lja3g0905 776 PANTHER DNA LIGASE 1 62 776 - -
Lja3g0905 776 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 396 614 - -
Lja3g0905 776 CDD Adenylation_DNA_ligase_I_Euk 393 611 - -
Lja3g0905 776 Pfam ATP dependent DNA ligase domain 404 608 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja3g0905 776 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 428 436 IPR016059 GO:0003909
Lja3g0905 776 Gene3D - 138 406 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lja3g0905 776 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 220 759 IPR000977 GO:0003910|GO:0005524|GO:0071897
Lja3g0905 776 Pfam ATP dependent DNA ligase C terminal region 633 744 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lja3g0905 776 MobiDBLite consensus disorder prediction 81 111 - -
Lja3g0905 776 ProSiteProfiles ATP-dependent DNA ligase family profile. 510 646 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lja3g0905 776 Gene3D DNA ligase/mRNA capping enzyme 433 558 - -
Lja3g0905 776 MobiDBLite consensus disorder prediction 50 111 - -
Lja3g0905 776 MobiDBLite consensus disorder prediction 742 776 - -
Lja3g0905 776 Coils Coil 229 249 - -
Lja3g0905 776 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 144 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0905 Lja-Chr3 9226690 9240109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0905 29 776 Core DNA Replication Machinery Family AT1G08130 67.152 0.0 1028
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0905 K10747 - gmx:100783155 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0905 3 9226690 9240109 Lja3g0905 3 9226690 9240109 ECH