Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0898 ATGCTCCAACATCCAATGGTCACTTTTTGGACCTCACTCTTCTACTGTCTCCTCCTGGCAGCCGCCGACACTGGAAGAGAATACTCCGGTGAGGAGGCACGGCAGCAGGAGGCTGATAGAGTGAAGAACTTGCCAGGGCAGCCGCCAGTGAAATTCAGACACTATGCTGGTTATGTGAAGCTAAGGCCACAAGAAGAGAAGGCATTGTTCTACTGGTTCTTTGAAGCTCAAGAAGCTCCTTCACAAAAGCCTCTTGTGCTTTGGCTTAATGGAGGACCTGGTTGTTCATCCATTGGCTATGGAGCTGCAAGTGAGCTTGGTCCATTTCTTGTGAAAGACAAACATGGCCTCAAACTTAACATGTTCTCTTGGAACAGAGTTGCCAATATCATATTCTTGGAGTCACCAGTTGGTGTTGGCTTTTCTTACACCAACAATTCCAAAGATTTACATGAACTTGGAGATAGAGTTTCTGCCAGTGACAACTATGCTTTCTTGATTGGTTGGTTCAAAAGGTTCCCAAGCTTCAGATCCCATGAATTTTATATTGCAGGAGAGAGCTATGCAGGGCATTATGTTCCACAACTTGCTGACGTCATCTATGAAGGAAACAAAGCAACACAACAGGGCTCTTATATAAACTTCAAGGGATTTATGATTGGAAATGCTGTGATCAATGATCTTACAGATGTAAATGGCCTGATAGATTATGCTTGGAGCCATGCCATCATCTCAGACAAAGTATATAATGGGATAGCAAAAAATTGTGACTTTGAAAAAGAAAACCAAACAAAGGCTTGTGCAGTGCATGTTGGAGCGTTATTAGGAGCTTACAAAGACATTGACATATATAACATTTACTCACCAATTTGCCTCGATGACTCTAAAAGAAGAGTTTCAACCAAACTTGTTGTTGCTCCTCATCTTCTCACCCAACATGATTTGTGGCATACGCTACCATCAGGATATGATCCTTGTACAGAAGATTATGTAAGCAAATATTTCAATAATCAGGATGTTCAAAAGGCACTACATGCCAATATCACCAAATTGCCATATCCATATACTCCTTGCAGCTCTGTAATTCAAAAATGGAATGACTCAGCAGACACGGTTCTACCAATCATTCAGAAGCTCCTAAATGCAGGTCTACGCATTTGGATCTACAGTGGGGACACAGATGGTAGAGTTCCAGTGACATCAACAAGGTACAGCATAAACAAGATGGGTTTGAAAGTCAAGAAAGAGTGGAGAGCTTGGTTTCACAAGCATCAAGTGGCAGGGTGGGTGGAAGTTTATGAGGGTGGTCTCACATTTGCAACCATTAGAGGTGCTGGCCACCAAGTTCCGGTGTTTGCACCACAACAATCCCTTTCTCTCTTCACCCATTTCCTCTCTTCTCATTCCCTCCCATCTTCTCGCTTCTAG 1428 0.43 MLQHPMVTFWTSLFYCLLLAAADTGREYSGEEARQQEADRVKNLPGQPPVKFRHYAGYVKLRPQEEKALFYWFFEAQEAPSQKPLVLWLNGGPGCSSIGYGAASELGPFLVKDKHGLKLNMFSWNRVANIIFLESPVGVGFSYTNNSKDLHELGDRVSASDNYAFLIGWFKRFPSFRSHEFYIAGESYAGHYVPQLADVIYEGNKATQQGSYINFKGFMIGNAVINDLTDVNGLIDYAWSHAIISDKVYNGIAKNCDFEKENQTKACAVHVGALLGAYKDIDIYNIYSPICLDDSKRRVSTKLVVAPHLLTQHDLWHTLPSGYDPCTEDYVSKYFNNQDVQKALHANITKLPYPYTPCSSVIQKWNDSADTVLPIIQKLLNAGLRIWIYSGDTDGRVPVTSTRYSINKMGLKVKKEWRAWFHKHQVAGWVEVYEGGLTFATIRGAGHQVPVFAPQQSLSLFTHFLSSHSLPSSRF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0898 475 Gene3D - 326 363 - -
Lja3g0898 475 Gene3D - 372 466 - -
Lja3g0898 475 Gene3D alpha/beta hydrolase 35 292 IPR029058 -
Lja3g0898 475 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 35 32 467 - -
Lja3g0898 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 467 IPR001563 GO:0004185|GO:0006508
Lja3g0898 475 Pfam Serine carboxypeptidase 45 466 IPR001563 GO:0004185|GO:0006508
Lja3g0898 475 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Lja3g0898 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 437 454 IPR033124 GO:0004185
Lja3g0898 475 SUPERFAMILY alpha/beta-Hydrolases 36 472 IPR029058 -
Lja3g0898 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Lja3g0898 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 437 450 IPR001563 GO:0004185|GO:0006508
Lja3g0898 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Lja3g0898 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0898 Lja-Chr3 9138135 9145501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0898 331 470 Calmodulin-binding Proteins AT2G22960 29.787 1.26e-13 67.4