Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0893 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAGTGTTAAGAGAGGACCTTGGTCACCTGAAGAAGACTCAAAGCTGAAGGAGTACATAGAGAAGCATGGCACTGGAGGGAATTGGATTGCTCTTCCTCAAAAAGCTGGTCTGAAGAGATGTGGGAAAAGTTGCAGATTGAGATGGCTTAACTATCTCAGGCCCAACATTAAGCATGGAGATTTCACAGATGAGGAAGACAGAATAATTTGCAGCCTCTATGTTAACATAGGAAGCAGGTGGTCAATTATAGCTGCTCAATTACCAGGAAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGTTGAAGAAAAAGCTCATGGGGTTGCTTCCAATATCTTATCACAGAGGAAAATCTTCATTCCCATCTTCCATTCAAAACCCTTCACCTTCTCCTTGTCACCAATCAATGTATAGAGACTACTCCTCATACATCCCAACAAATGCATCATCCTTCACAGGCCTTGACCCAATTTCACTCCATTCAAGCATTTATGCAAATCCAAGGTCCACAACAACAACCTCATCAGTTTCTCTCCCCTTTTACCAAAACCAAGAGGCCATGCAATACTACTGCCCTGGGAGATCAGAGAACATGCTGATGTTTGGGAGTGAAGGAAGTTGCAGTTCCTCTGATGGAAGCTGCACTCAGGTGAAGGAGATCAAGCAAGAAGAAATGGGTTATTACAACATGTCAAGTGGGTATGATCATGAGTATAATAATAGTTTAATGGTTAGTTATGGTAGCATTAATGGTGGGGGTGAAAATGTGAACCAATATGCAGAAAAGTCATCAGGGGGAGGTGGCTGTTGCTCTGACCAAACAACACTGTTATCACCTTTAGATTATGGGATTGAAGATATTCAGCAATTGATTAGTAGTAGTTGTGGTAGCAGAAGTGATTTCAATGTTGTTGATGAAAACAAGACTGAGGAGAAGGGCATGTACTACTACTATTACTGA 996 0.4187 MGRAPCCDKASVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFTDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPISYHRGKSSFPSSIQNPSPSPCHQSMYRDYSSYIPTNASSFTGLDPISLHSSIYANPRSTTTTSSVSLPFYQNQEAMQYYCPGRSENMLMFGSEGSCSSSDGSCTQVKEIKQEEMGYYNMSSGYDHEYNNSLMVSYGSINGGGENVNQYAEKSSGGGGCCSDQTTLLSPLDYGIEDIQQLISSSCGSRSDFNVVDENKTEEKGMYYYYY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0893 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lja3g0893 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lja3g0893 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lja3g0893 331 Gene3D - 7 68 - -
Lja3g0893 331 PANTHER OS09G0431300 PROTEIN 1 235 - -
Lja3g0893 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lja3g0893 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lja3g0893 331 Gene3D - 70 131 - -
Lja3g0893 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lja3g0893 331 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 235 - -
Lja3g0893 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lja3g0893 331 SMART sant 13 64 IPR001005 -
Lja3g0893 331 SMART sant 67 115 IPR001005 -
Lja3g0893 331 CDD SANT 16 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0893 Lja-Chr3 9086623 9088877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0893 1 119 MYB Transcription Factor Family AT5G57620 88.235 2.35e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g0893 Myb_DNA-binding 7.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0893 K09422 - gmx:100779919 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0893 3 9086623 9088877 Lja3g0893 3 9086623 9088877 ECH
Lja3g3673 3 72889778 72891423 Lja3g0893 3 9086623 9088877 PCT