Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0890 ATGCTGTCACTAAGGCCTTCTCTGTTGCTACCAAAGGACCAAAATCTCTCACTAGTCTCATTCCTCTTCAACAATGTCACCTCTTTCCCTAACAAACCCGCTCTCATTGATGCTGATTCCGCCAAAACCATCACCTTCTCCCAACTCAAATCCATAGTTGCCAGGCTTGCCGGTAGTTTCCTCCGACTCGGTCTCGCTAAAAACGATGTCGTCCTCCTCTTCGCCCCTAACAACATCTACTTCCCCATCTGCTTCCTTGCTGCCACGGCCATTGGCGCCGTCGCCTCCACCGCTAACCCCCTCTACACTATTGCTGAACTCTCCAGACAAATCAAGGATTCTAACCCCAAGCTTGTCATCACTGTCCGTGAATTATGGGACAAAGTGAAAGGCTTCAACTTCAAACTCCCCACAGTGATCATCGGTTCAGATGATGCCACCATTGCCACGAGTTCAAAGACCTTAAGCTTCAATGCGTTAATGGAAATGGCAGAGCCAGCTAAAGAGTTGCCACAAAACAACGTGAAGCAGAGCGATACTGCGACAATTCTATACTCTTCTGGGACTACAGGGGTGAGCAAAGGCGTGCTACTAACACATGGAAACTTCATCGCGGTGTCGCTAATGGTAGGAATGGACGATGATTTGGCAGGTGAGTCAGAGGGCGTGTTCCTCTGCGTTCTGCCAATGTTTCACTTGTTCGGGATCGCACTCGTCTCGTACGCGTCGCTCCGGCGGGGGAATGCGGTGGTGTCAATGGGAAGGTTTGAGATTGAGGCGCTTCTAAGGGCTGTTGAGAAGTACAAGGTGACTGATATGTGGCTTGTTCCTCCTATCGTGCTTGCTCTGGTGAAACTGAAACAGAGTGTGGTTGGTAACTATGATCTTTCATCGTTGAAGTATGTTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGCAGGAGTGTGCCATTCGATTTCCTCATGTTACTGTTTTTCAGGGCTATGGTATGACAGAAACTAGTGGCATTATTTCTATGGAGAATCCAAGAGAAGGGGTTCGTCATAGTGGCTCAACTGGATTGCTGGCTGCAGGAATTGAAGCTCAAATAGTGAGTGTGGAGACACAAAGGTCACTCCCTCCTAGACAGATGGGGGAAATATGGGTACGAGGTCCTAACATGATGCAAGGTTATCATAACAATCCAGAAGCCACAAGATTGACTATAGATAATAATGGATGGTTACATTCAGGAGATCTTGGATATTTTGATGAGGATGGTCAACTATATATTGTGGACCGTATTAAAGAATTGATCAAGTATAAAGGTCTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGATGCTGTTGTTGTCCCATATCCAGATGATGAGGCCGGTGAGGTTCCAATTGCCTACGTTGTTCGTTCGCCCAACAACTCATTGAAAGAGGAAGAAGTTAAAAAGTTTATTGCTAATCAGGTAGCACCTTACAAAAAATTGCGGAGGGTGACATTCATCAGCAGTGTTCCTAAGACAGCTTCTGGAAAAATTCTCAGAAGAGAGCTAATTGCAAAAGCACGATCCAAAATATAA 1605 0.4636 MLSLRPSLLLPKDQNLSLVSFLFNNVTSFPNKPALIDADSAKTITFSQLKSIVARLAGSFLRLGLAKNDVVLLFAPNNIYFPICFLAATAIGAVASTANPLYTIAELSRQIKDSNPKLVITVRELWDKVKGFNFKLPTVIIGSDDATIATSSKTLSFNALMEMAEPAKELPQNNVKQSDTATILYSSGTTGVSKGVLLTHGNFIAVSLMVGMDDDLAGESEGVFLCVLPMFHLFGIALVSYASLRRGNAVVSMGRFEIEALLRAVEKYKVTDMWLVPPIVLALVKLKQSVVGNYDLSSLKYVGSGAAPLGKELMQECAIRFPHVTVFQGYGMTETSGIISMENPREGVRHSGSTGLLAAGIEAQIVSVETQRSLPPRQMGEIWVRGPNMMQGYHNNPEATRLTIDNNGWLHSGDLGYFDEDGQLYIVDRIKELIKYKGLQVAPAELEGLLVSHPEILDAVVVPYPDDEAGEVPIAYVVRSPNNSLKEEEVKKFIANQVAPYKKLRRVTFISSVPKTASGKILRRELIAKARSKI* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0890 534 Gene3D - 432 533 IPR045851 -
Lja3g0890 534 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 533 - -
Lja3g0890 534 ProSitePatterns Putative AMP-binding domain signature. 183 194 IPR020845 -
Lja3g0890 534 CDD 4CL 12 526 - -
Lja3g0890 534 Gene3D - 5 431 IPR042099 -
Lja3g0890 534 SUPERFAMILY Acetyl-CoA synthetase-like 13 532 - -
Lja3g0890 534 Pfam AMP-binding enzyme C-terminal domain 445 520 IPR025110 -
Lja3g0890 534 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 3 533 - -
Lja3g0890 534 Pfam AMP-binding enzyme 24 436 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0890 Lja-Chr3 9069262 9073545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0890 3 534 Monolignol Biosynthesis Gene Families AT4G05160 66.729 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0890 K01904 - gmx:100808944 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0890 3 9069262 9073545 Lja3g0890 3 9069262 9073545 ECH
Lja3g3674 3 72902992 72913506 Lja3g0890 3 9069262 9073545 PCT