Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0886 ATGGTGTCCGAGGCCAGCAAGAAAAAGGCTGCACAAAAGAAGGTCGCCGCCGCCGCTAAAAGAGGCGGCAAGGCTGCTGCTGCCGCCGTAGCCCGCGCAGTTTCTGCCAAAGCTGCAGACAAAGTCGCCGACGCAGTCGCCGATATTCACATATCAGATCGCACATGCACCGGCGTCCTCTGCTCCCACCCTCTCTCCAGAGATATTAGGATAGAGTCTCTATCAGTCACCTTCCATGGTCATGATCTTATAGTTGATTCTGAATTGGAGCTGAATTATGGAAGGCGTTATGGTTTACTTGGATTAAATGGTTGTGGGAAGTCTACTCTGCTTACTGCGATAGGTTGTCGAGAACTTCCAATTCCTGAGCACATGGATATTTATCACCTTACCAGGGAAATTGAAGCTTCTGATATGTCTGCTTTGGAAGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGTTTTGGCGGCACAGGAAGATGGAGGTGGTGAAAACCTTGAACGTGTTTATGAACGATTGGAAGCTCTAGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGTTTCAACAAGGAGATGCAGGCAAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTGTCACGAGCTTTATTTATCAACCCAACCATTCTTCTACTTGATGAACCAACTAATCATCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAACTTGAAGAAGTTTGACCGTATTCTGGTTGTGATTTCACACTCTCAGGACTTCCTTAATGGTGTATGCACTAATATTATCCACATGCAAAACAAAAAGCTGAAGTTCTACAGTGGTAACTACGATCAATATGTTCAGACACGTACTGAGTTGGAAGAGAATCAGATGAAGCAGTACAGGTGGGAGCAAGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAGAAAACACTGGCAAAAATGGAACGAGGTGGACTTACAGAAAAGGTGGTCAAAGACAGAGTTTTGGTGTTCCGTTTTACTGATGTGGGAAAACTTCCCCCTCCTGTTCTGCAGTTTGTTCAGGTGACTTTTGGTTACTCTCCTGACAATCTCATCTACAAAAACATTGACTTTGGGGTCGACTTAGACTCTAGGGTTGCACTGGTTGGACCCAATGGTGCTGGAAAGAGTACACTGCTGAAGTTAATGACAGGTGATTTGATTCCTAATGATGGCATGGTCCGGCGCCATAATCATCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAGAAGCTAGACTTGGAGTTGTCTGCTCTCCAGTTTATGATGAAAGAATACCCTGGAAATGAGGAAGAGAGAATGAGGGCAGCTATTGGGAGGTTTGGGCTGTCAGGTAAAGCCCAGGTGATGCCCATGAAGAACTTGTCAGATGGGCAAAGGAGTCGAGTGATATTCGCGTGGCTAGCTTGGAGGCAGCCTCATCTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATCGAGACAATCGACTCATTGGCTGAGGCATTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAACTGTGACCCGCTGGGACGGTGACATTATGGCTTTCAAGGAGCATCTAAGGTCAAAGGCAGGTTTATCTGACTGA 1788 0.462 MVSEASKKKAAQKKVAAAAKRGGKAAAAAVARAVSAKAADKVADAVADIHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPEHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEVLAAQEDGGGENLERVYERLEALDAATAEKRAAEILHGLGFNKEMQAKKTRDFSGGWRMRIALSRALFINPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVISHSQDFLNGVCTNIIHMQNKKLKFYSGNYDQYVQTRTELEENQMKQYRWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVKDRVLVFRFTDVGKLPPPVLQFVQVTFGYSPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLIPNDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMMKEYPGNEEERMRAAIGRFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTRWDGDIMAFKEHLRSKAGLSD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0886 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 575 IPR027417 -
Lja3g0886 595 CDD ABCF_EF-3 380 572 - -
Lja3g0886 595 Pfam ABC transporter 280 353 IPR032781 -
Lja3g0886 595 Gene3D - 69 333 IPR027417 -
Lja3g0886 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Lja3g0886 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Lja3g0886 595 Gene3D - 345 592 IPR027417 -
Lja3g0886 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Lja3g0886 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 313 IPR027417 -
Lja3g0886 595 SMART AAA_5 405 593 IPR003593 -
Lja3g0886 595 SMART AAA_5 93 286 IPR003593 -
Lja3g0886 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Lja3g0886 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Lja3g0886 595 CDD ABCF_EF-3 69 286 - -
Lja3g0886 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Lja3g0886 595 PANTHER - 1 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0886 Lja-Chr3 8960039 8964592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0886 200 267 Calmodulin-binding Proteins AT2G36910 40.000 4.77e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0886 K06185 - gmx:100809491 1033.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0886 3 8960039 8964592 Lja3g0886 3 8960039 8964592 ECH
Lja3g3677 3 72928284 72932549 Lja3g0886 3 8960039 8964592 PCT