Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0885 ATGGAGAAGATTGTAGGTGGAATTTCAAAGTTCAAGATTGTGTTCAAAAAGCTTCAAAAGATTTTTCTCTTGCGGGGCAGAACAAATAAAGAGGGACATTTTGCAGTGATTGCTGATGATGGGGAAGAACAAAAGAGGTTCGTGGTGCCATTGAGTTGTTTGAGAAACTCAACATTCGTGAGACTATTGGAGCAAGCAGCAGAAGACTATGGGTTTGATCAGGGTGGTGTACTAACCATTCCTTGCAGGCCTAATGAGCTTGAAATGTTATTGGCCCAGCAATGGCAGCAGCTAGACGGGAGAGGGAGAAATTCTGTGACCACATTTGAGTCGCAGTTGAATTTCTAA 348 0.4282 MEKIVGGISKFKIVFKKLQKIFLLRGRTNKEGHFAVIADDGEEQKRFVVPLSCLRNSTFVRLLEQAAEDYGFDQGGVLTIPCRPNELEMLLAQQWQQLDGRGRNSVTTFESQLNF* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0885 115 Pfam Auxin responsive protein 28 91 IPR003676 GO:0009733
Lja3g0885 115 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 29 98 - -
Lja3g0885 115 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 29 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0885 Lja-Chr3 8958233 8958580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0885 32 110 Calmodulin-binding Proteins AT3G43120 39.506 1.36e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0885 - K14488 gmx:102668167 122.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0885 3 8958233 8958580 Lja3g0885 3 8958233 8958580 ECH
Lja3g3678 3 72949626 72950117 Lja3g0885 3 8958233 8958580 PCT