Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0884 ATGAGAAGTGTAGAGTTCAAGGTCATTGAAACCGATCCTGGGGAGTATTGTGTAGTTGCTCCAGACACTGAAATATTCTGTGAGGGGGAGCCTGTGAGAAGGGAGGATGAGGAAAGGCTGGATGAAATTGGGTATGATGATGTGGGTGGTGTCAGGAAGCAAATGGCACAGATTCGTGAGTTGGTAGAGCTTCCACTGAGGCATCCACAACTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTGCTGTATGGACCCCCAGGTTCTGGTAAGACATTGATAGCAAGAGCTGTAGCTAATGAAACTGGAGCATTCTTCTTTTGTATTAATGGTCCAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAGAGCAATCTCAGAAAAGCATTTGAAGAAGCAGAAAAGAATGCTCCCTCAATTATCTTTATTGATGAGATTGATTCTATTGCACCCAAGCGGGAGAAGACAAACGGGGAAGTTGAACGCCGTATAGTCTCACAGCTTTTGACTCTTATGGATGGATTAAAGGCTCGTGCTCATGTTATAGTTATGGGAGCTACAAATCGTCCAAATAGCATTGACCCAGCCTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTAACATTGGGGTTCCGGACGAGGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAAGATGAAGCTTTCTGATGATGTTGATTTAGAGAAAATTGCAAAAAATACTCATGGTTATGTTGGTGCCGACCTTGCTGCTCTTTGCACTGAATCTGCTCTGCAATGCATTAGGGAGAAGATGGATGTCATTGATTTAGAAGCTGATACTATTGATGCTGAGGTGTTGAATTCTATGGCAGTTACAAATGAGCATTTCCATACTTCTCTAGAAACAAGCAATCCGTCTGCTTTACGGGAAACTGTTGTTGAGGTGCCTAATGTCAGTTGGGAAGATATTGGAGGCCTTGAGAATGTCAAGCGCGAGCTGCAAGAGACTGTTCAATATCCTGTGGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTCCTCTTCTATGGACCTCCAGGAAATGGGAAAACTATGTTGGCCAAGGCAATAGCTAATGAATGCCAAGCTAACTTCATCAGCGTGAAAGGCCCAGAATTGCTTACTATGTGGTTTGGCGAAAGTGAAGCCAATGTTCGAGAAATTTTTGACAAGGCCAGACAATCTGCTCCATGCATCCTCTTCTTTGATGAGCTTGATTCCATTGCCACTCAGAGAGGAAATAGTGTTGGGGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGTATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACCAACAGACCTGACATCATTGATTCAGCACTTCTACGACCTGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGACTCCCGTCATCAAATCTTCAAGGCCTGCTTGAGGAAGTCACCTGTAGAGAAAGAAGTTGGGTTGAGAGCTCTAGCTAAGTATACTCAAGGCTTCAGTGGTGCTGATATAACAGAGATATGCCAGCGAGCTTGCAAATATGCTATAAGAGAAAGCATAGAAAAGGACATTGAGAGAGACCGGAAGAGAAAAGAACATCCTGAGGCCATGGATGAAGACATTGAGGGAGAGGGAGAGGTTGCTGAGATGATCAAGGCTGCTCATTTTGAAGAGTCAATGAAGTTTGCGCGAAGGAGTGTTAGTGATGCTGATATACGCAAGTATCAGTCATTTGCTCAGACCTTACAGCAGTCCCGGGGTTTTGGAAGTGAATTCAGATTTCCTGCGACTGGAGGCAGGACCGTCGGAACTGCTGATGCTTTCGCAACTTCTGCTGGTGGGGCTGATGAAGAGGATCTGTATAGTTAG 1944 0.4419 MRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVRREDEERLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARAHVIVMGATNRPNSIDPALRRFGRFDREINIGVPDEVGRLEVLRIHTKKMKLSDDVDLEKIAKNTHGYVGADLAALCTESALQCIREKMDVIDLEADTIDAEVLNSMAVTNEHFHTSLETSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGNGKTMLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCILFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVEKEVGLRALAKYTQGFSGADITEICQRACKYAIRESIEKDIERDRKRKEHPEAMDEDIEGEGEVAEMIKAAHFEESMKFARRSVSDADIRKYQSFAQTLQQSRGFGSEFRFPATGGRTVGTADAFATSAGGADEEDLYS* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0884 647 CDD AAA 49 212 - -
Lja3g0884 647 Gene3D - 1 47 - -
Lja3g0884 647 CDD AAA 322 489 - -
Lja3g0884 647 SUPERFAMILY Cdc48 domain 2-like 1 42 IPR029067 -
Lja3g0884 647 Pfam AAA+ lid domain 235 273 IPR041569 -
Lja3g0884 647 Pfam AAA+ lid domain 514 551 IPR041569 -
Lja3g0884 647 Pfam ATPase family associated with various cellular activities (AAA) 356 489 IPR003959 GO:0005524|GO:0016887
Lja3g0884 647 Pfam ATPase family associated with various cellular activities (AAA) 83 212 IPR003959 GO:0005524|GO:0016887
Lja3g0884 647 ProSitePatterns AAA-protein family signature. 183 201 IPR003960 GO:0005524|GO:0016887
Lja3g0884 647 ProSitePatterns AAA-protein family signature. 459 477 IPR003960 GO:0005524|GO:0016887
Lja3g0884 647 Gene3D - 48 212 IPR027417 -
Lja3g0884 647 PANTHER AAA-FAMILY ATPASE 2 622 - -
Lja3g0884 647 Gene3D - 306 489 IPR027417 -
Lja3g0884 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 304 IPR027417 -
Lja3g0884 647 Gene3D - 214 305 - -
Lja3g0884 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 605 IPR027417 -
Lja3g0884 647 SMART AAA_5 79 215 IPR003593 -
Lja3g0884 647 SMART AAA_5 352 491 IPR003593 -
Lja3g0884 647 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 2 622 - -
Lja3g0884 647 Gene3D - 493 604 - -
Lja3g0884 647 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 4 608 IPR005938 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0884 Lja-Chr3 8945843 8949105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0884 348 547 Calmodulin-binding Proteins AT3G56690 40.394 1.74e-38 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0884 K13525 - ini:109163636 1186.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0884 3 8945843 8949105 Lja3g0884 3 8945843 8949105 ECH