Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0881 ATGGTTGAGATTGAGGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGAAGGGAGCAAACCTTCATAGCCACAGTTAATTCCCCATCTGTCCCAACAGACACCACAGCCAAATTCGATTTACCTGTTGATTCAGAACACAAAGCCAAAGTTTTCAAACTGTTCTCATTAGCCAATCCTCACATGAGAACCTTCCACTTATCATGGATTTCCTTCTTCACCTGTTTTGTCTCTACCTTTGCAGCAGCCCCTCTTGTCCCCATCATCCGAGACAACCTCAATCTCACCAAAAGCGACATCGGCAACGCCGGTGTCGCTTCTGTCTCCGGCAGCATTTTCTCCAGGCTCACTATGGGTGTAATTTGTGACCTCTTAGGCCCGCGTTACGGCTGCGCCTTCTTGATCATGCTGTCTGCACCAACTGTGTTCTGCATGTCATTTGTGAATGATGCTGCAGGCTACATTGTGGTTCGGTTCATGATCGGGTTCTCATTGGCCACGTTTGTTTCGTGCCAGTACTGGATGAGCACCATGTTTAACACTAAGATTATTGGGCTTGTTAATGGAACTGCAGCTGGGTGGGGTAATATGGGTGGTGGGGCCACTCAGCTCATCATGCCTATTGTCTATGAATTGATCAGGAGAGCGGGGTCCACTCCCTTCACTGCTTGGAGGATTGCCTTCTTCATCCCTGGTTTCATGCATGTTTTCATGGGGATCCTTGTCTTAACCCTTGGCCAAGACTTGCCTGATGGCAACCTCAGTGCCCTCCAGAAGAAGGGTGATGTTGCTAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATCTTTGCACTTCTCTATGGATACTCTATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAATCTGAAGCTGCACACAGCTGGAATCATAGCTGCTTCATTTGGAATGGCAAATCTTGTTGCTCGCCCCTTTGGCGGATATGTATCTGATGTTGCAGCGCGGTTGTTTGGTATGAGAGGAAGACTGTGGACCCTGTGGATCCTCCAAACACTTGGAGGAGTGTTCTGTATATGGCTTGGGCGTGCGAATTCGCTTCCAATTGCTGTGTTGGCCATGATCCTTTTCTCAGTTGGAGCTCAAGCTGCTTGTGGTGCAACATTTGGAATCATTCCTTTCATCTCAAGAAGGTCTTTGGGGATCATTTCAGGTCTAACCGGTGCAGGTGGAAACTTCGGTTCTGGTTTGACACAATTGGTATTCTTTTCAACTTCAAGATTCTCCACAGCTGCAGGATTGTCATGGATGGGTGTGATGATTGTGGGATGCACTCTCCCCGTGACACTTGTTCACTTCCCACAGTGGGGAAGCATGTTCCTCCCTCCTTCAAAAGACATCCACAAGTCCAGTGAAGAACACTATTACACTGCTGAATGGGACGAGGAAGAGAGGAAGAAGGGGTTACACTCACAAAGTCTCAAGTTTGCAGAGAATAGTCGCTCTGAGAGAGGCAAGCGTATTTCCTCTGCACCAACACCTCCAAACACAACCCCTACGCATGTCTAG 1593 0.4752 MVEIEGSPGSSMHGVTGREQTFIATVNSPSVPTDTTAKFDLPVDSEHKAKVFKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFNTKIIGLVNGTAAGWGNMGGGATQLIMPIVYELIRRAGSTPFTAWRIAFFIPGFMHVFMGILVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYVSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSRFSTAAGLSWMGVMIVGCTLPVTLVHFPQWGSMFLPPSKDIHKSSEEHYYTAEWDEEERKKGLHSQSLKFAENSRSERGKRISSAPTPPNTTPTHV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0881 530 SUPERFAMILY MFS general substrate transporter 59 459 IPR036259 -
Lja3g0881 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Lja3g0881 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Lja3g0881 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
Lja3g0881 530 MobiDBLite consensus disorder prediction 514 530 - -
Lja3g0881 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
Lja3g0881 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Lja3g0881 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Lja3g0881 530 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Lja3g0881 530 MobiDBLite consensus disorder prediction 490 513 - -
Lja3g0881 530 MobiDBLite consensus disorder prediction 490 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0881 Lja-Chr3 8931617 8934017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0881 1 530 Inorganic Solute Cotransporters AT5G60770 80.000 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0881 K02575 - gmx:100782969 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0881 3 8931617 8934017 Lja3g0881 3 8931617 8934017 ECH