Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0880 ATGGTTGAGATTGAAGGATCTCCAGGAAGCTCCATGCATGGAGTAACAGGGAGGGAACAAACCTTCATATCCTCAGTTTCTTCCCCAATGGTCCCAACAGACACCACAGCCAAATTCGATTTACCAGTTGATTCAGAGCACAAAGCCAAAGTTTTGAAACTGTTCTCATTAGCTAATCCTCACATGAGAACCTTCCACTTATCATGGATTTCCTTCTTCACCTGCTTTGTCTCTACCTTTGCAGCAGCTCCTCTTGTCCCCATCATCCGAGACAACCTCAATCTCACCAAAAGCGACATTGGCAACGCCGGTGTCGCGTCTGTCTCCGGCAGCATTTTCTCCAGGCTCACCATGGGTGTAATTTGTGACCTCTTAGGCCCACGTTACGGGTGTGCCTTCCTGATCATGCTGTCTGCACCAACTGTGTTCTGCATGTCGTTTGTGAATGATGCTGCAGGCTACATTGTGGTTCGGTTCATGATCGGGTTCTCATTGGCCACGTTTGTTTCGTGCCAGTACTGGATGAGTACCATGTTTAACAGTAAGATTATTGGGCTTGTTAATGGAACTGCAGCTGGTTGGGGTAACATGGGTGGTGGAGCCACTCAGCTCATCATGCCTATTGTCTATGAATTGATCAGGAGAGCGGGGTCCACTCCCTTCACTGCTTGGAGGATTGCCTTCTTCATCCCTGGTTTCATGCATGTTTTCATGGGGATCCTTGTCTTAACCCTTGGCCAAGACTTGCCTGATGGCAACCTCAGTGCCCTCCAGAAGAAGGGTGATGTTGCTAAAGACAAATTCTCCAAGGTGTTATGGTATGCCATAACAAATTACAGGACATGGATCTTTGCACTTCTCTATGGATACTCTATGGGAGTCGAATTAACCACTGACAATGTCATTGCTGAATTTAATCTGAAGTTGCACACAGCTGGAATCATTGCTGCTTCATTTGGAATGGCAAATCTTGTTGCTCGCCCCTTTGGCGGATATGTATCTGATGTTGCAGCGCGGTTGTTTGGTATGAGAGGAAGACTGTGGACTCTGTGGATCCTCCAAACACTTGGAGGAGTGTTCTGTATATGGCTTGGGCGTGCGAATTCACTTCCAATTGCGGTGTTGGCGATGATCCTTTTCTCAGTTGGAGCTCAAGCTGCTTGTGGTGCAACATTTGGAATCATTCCTTTCATCTCAAGAAGGTCTTTGGGGATCATTTCAGGTCTAACTGGTGCAGGTGGCAACTTTGGTTCTGGATTGACACAGTTGGTATTCTTTTCAACTTCAAGATTCTCCACAGGTGCAGGATTGTCATGGATGGGTGTGATGATTGTTGGTTGCACTCTTCCGGTGACTCTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTTCCTCCTTCAAAAGACATCAACAAGTCCAGTGAGGAACACTATTACACTGCTGAATGGGATGAGGAAGAGAGGAAGAAGGGGTTGCACTCTCAAAGTCTTAAGTTTGCAGAGAATAGTCGCTCTGAGAGAGGAAAACGTGTTTCCTCTGCTCCAACTCCTCCAAACACAACCCCTACCCATGTCTAA 1578 0.4702 MVEIEGSPGSSMHGVTGREQTFISSVSSPMVPTDTTAKFDLPVDSEHKAKVLKLFSLANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDIGNAGVASVSGSIFSRLTMGVICDLLGPRYGCAFLIMLSAPTVFCMSFVNDAAGYIVVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPIVYELIRRAGSTPFTAWRIAFFIPGFMHVFMGILVLTLGQDLPDGNLSALQKKGDVAKDKFSKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEFNLKLHTAGIIAASFGMANLVARPFGGYVSDVAARLFGMRGRLWTLWILQTLGGVFCIWLGRANSLPIAVLAMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTSRFSTGAGLSWMGVMIVGCTLPVTLVHFPQWGSMFLPPSKDINKSSEEHYYTAEWDEEERKKGLHSQSLKFAENSRSERGKRVSSAPTPPNTTPTHV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0880 525 CDD MFS_NRT2_like 65 453 IPR044772 GO:0015112
Lja3g0880 525 SUPERFAMILY MFS general substrate transporter 57 454 IPR036259 -
Lja3g0880 525 Pfam Major Facilitator Superfamily 69 420 IPR011701 GO:0022857|GO:0055085
Lja3g0880 525 MobiDBLite consensus disorder prediction 484 525 - -
Lja3g0880 525 Gene3D MFS general substrate transporter like domains 264 461 IPR036259 -
Lja3g0880 525 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 522 IPR044772 GO:0015112
Lja3g0880 525 Gene3D MFS general substrate transporter like domains 58 253 IPR036259 -
Lja3g0880 525 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 522 - -
Lja3g0880 525 MobiDBLite consensus disorder prediction 509 525 - -
Lja3g0880 525 MobiDBLite consensus disorder prediction 484 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0880 Lja-Chr3 8926215 8928476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0880 1 525 Inorganic Solute Cotransporters AT5G60770 79.434 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0880 K02575 - gmx:100782969 968.378
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0880 3 8926215 8928476 Lja3g0880 3 8926215 8928476 ECH