Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0875 ATGTCTTCTTCTACTAATACTACTACTGCTAACCAACCCGAACCCATGCCTGAGACCCGTCTCCCTTCTAAAACTACAAACACAAAGCTACACAAGGATCGCCACACCAAGGTGAATGGGAGAGAAGCTCGTGCTACTTTACCACCATTGTGCGCTGCTCGAGTCTTCCAACTCACAAGGGAGTTAGGCTTCAAATCCCATGGTGAGAGTGTTGAGTGGCTCTTACGCCAGGCTGAGCCCTCAATTATTGCTGCCAGTGGCACAGGAATAATACCATCTTCCGTGGACATCGCAAACTTAGCTACAGTTGCAAATACATCAACACTGTTACGATATATTAGGGGTGCCTATATAAATAGGCTTAGGCCATGTAGAATAGTTATGTTGTGA 390 0.459 MSSSTNTTTANQPEPMPETRLPSKTTNTKLHKDRHTKVNGREARATLPPLCAARVFQLTRELGFKSHGESVEWLLRQAEPSIIAASGTGIIPSSVDIANLATVANTSTLLRYIRGAYINRLRPCRIVML* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0875 129 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0875 129 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 17 104 - -
Lja3g0875 129 ProSiteProfiles TCP domain profile. 31 85 IPR017887 -
Lja3g0875 129 MobiDBLite consensus disorder prediction 25 41 - -
Lja3g0875 129 Pfam TCP family transcription factor 31 99 IPR017887 -
Lja3g0875 129 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 104 IPR005333 GO:0003700
Lja3g0875 129 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0875 Lja-Chr3 8858036 8858425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0875 32 114 TCP Transcription Factor Family AT5G08330 60.241 3.82e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja3g0875 TCP 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0875 - - var:108322003 117.087