Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0874 ATGTTCCAATGCTTAATAGCCCATTTTATCTATTATTCTAAGTTACTTCTATGTATAATAATAAATTGCAGGTATTACTGCAGAACAGGTTCTACTGCTCAAGAGCGGTGTTTCAGGTATGCAAGCTGTGAGCCTAAATCAACAAATCAAAATATCACTGCATATGGTGTCCTGTTTTTTGCTGCCTTGGGTTTCCTGCTTATTATCATATATAACTGTTCTGACCAAGTTATTGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCAGCAAGTGTGAGAGAATCACAAGCGCGTGAAAAATGGAAAACTGCAAAAGAAACTGCCAAGAAGCATGCAGTTGGATTGCAATCACAATTATCGCGCACATTTTCTCGCAAGAAAACTTCAAAGCTAGATTTGAAAGGTTTTGGTTCTAAACATACAGACTTGCCACCTGTGGCACCAGCAGGTGCTAGTACATCAAAAGGAAAGAAAAAGGACAAAAGCAACCTCACAAACATAATAAATGATATTGAGCAAGACCCTGATAGTCAAGAAGGCTTCAATGTTCAGATAGGAGATAAGAATGTCAAAAAGCATGCACCAAGGGGTAAACAATTGCATACTCAGAGCCAGATTTTCAAGTATGCATATGGTCAGATTGAAAAGGAAAAGGCTTTACAGGAACAAACTAAAAACATGACCTTCTCTGGAGTAATTTCAATGGCTAATGACATTGAGATAAGGAAGAGGCCAACCATTGAGGTTGCTTTTAAAGACTTAACCCTCACTTTGAAAGGGAAAAACAAACATCTATTGAGATGTGTGACTGGTAAATTACATCCCGGCCGTGTTTCAGCAGTCATGGGTCCATCCGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACAACTGGTCAAGTTCTTGTGAACGGCAAGGAATCATCAATGCGATCATACAAGAAGATCATTGGCTTTGTGCCACAAGATGATATTGTCCATGGCAATTTGACAGTGGAGGAGAATCTGTGGTTCAGTGCCAGATGCAGACTCTCTGCTGATCTACCAAAAGAAGAGAAAGTGTTGGTGGTTGAAAGAGTCATTGAGTCTTTGGGCCTTCAGGCAATAAGGGATTCTCTGGTTGGGACAGTGGAGAAGAGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGACTGGAAATGGTTATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCAGGTTTAGACAGTTCATCTTCTCAGTTACTGCTTAGAGCCCTTAGACGCGAGGCTCTTGAAGGTGTCAACATATGTGTAGTCCTTCACCAACCAAGTTACACCTTGTTCAAAATGTTTGATGATTTTATACTGCTTGCAAAAGGAGGACTTACAGTGTATCATGGACCTGTGAACAAAGTGGAAGAGTACTTTTCAAGCATGGGAATTGTAGTCCCTGACCGTGTCAACCCTCCAGATTACTATATTGATATTTTGGAAGGAATAATAAAACTAAGCGCAAGTTCAGGAGTGAACCTTAAACAACTACCTGTTAGATGGATGCTTCATAATGGGTACCCGGTGCCTATGGATATGCTGAAGACTGTTGAAGGATTGACCACCCCAGGTGGTGATGGTTCAGCACATGGAGCAGCTACCCCTGGACAAGATGCTGGAGCATCTTCTTTTGCTGGAGAACTTTGGCAGGATGTGAAGTGCAATGTTGAGATGAAGAGGGACACCCTTCAACTCAACTTCCTAAGTTCAAACGACGACTTGTCCGATAGGAAAACACCTGGAGCTTTCACACAATACAAATACTTTCTTGGAAGAGTTGGTAAGCAGAGGCTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTGCTGCTAGCTGGCCTCTGCTTAGGAACACTTGCCAAAGTGAGTGATGAATCTTTTGGAGCAACCGGTTATACATACACAGTAATAGCAGTTTCACTCCTGTCCAAGATTGCGGCTATGAGATCATTCTCAATGGACAAGTTGCACTACTGGAGGGAAAGTGCTTCCGGGATGAGTAGCCTGGCTTACTTTCTTTCAAAGGACACGGTTGACCATTTCAGCACAGTTGTCAAACCTCTGTTTTATCTCTCAATGTTCTATTTCTTCAACAATCCAAGATCAACTGTCACAGATAACTACATGGTTCTGCTATGTTTGGTGTATTGTGTCACTGGCATAGCTTATGTATTGGCAATCTCCCTTCAACCCGGTCCAGCCCAGCTGTGGTCAGTGTTACTTCCAGTAGTTTTGACACTCGTAGCAACCTATGATAATGAAGAAGATAGCAGTATAGTGCGCTTTCTATCTGATTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTAATATCAAATGCTAAAAGATATTCTGGAGTTTGGTTAATTAGTCGATGTGGTGCACTCAATTCATACGGCTATGATCTCAAACACTACAACTATTGTTTACTCCTCCTCGTTGTGACAGGGGCTATTAGCCGCATGCTTGCATTTTTTTGTATGGTAACCTTCCAGAAGAAATAG 2592 0.4167 MFQCLIAHFIYYSKLLLCIIINCRYYCRTGSTAQERCFRYASCEPKSTNQNITAYGVLFFAALGFLLIIIYNCSDQVIATRERRQAKSRERAAASVRESQAREKWKTAKETAKKHAVGLQSQLSRTFSRKKTSKLDLKGFGSKHTDLPPVAPAGASTSKGKKKDKSNLTNIINDIEQDPDSQEGFNVQIGDKNVKKHAPRGKQLHTQSQIFKYAYGQIEKEKALQEQTKNMTFSGVISMANDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLHPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVLVNGKESSMRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICVVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGIVVPDRVNPPDYYIDILEGIIKLSASSGVNLKQLPVRWMLHNGYPVPMDMLKTVEGLTTPGGDGSAHGAATPGQDAGASSFAGELWQDVKCNVEMKRDTLQLNFLSSNDDLSDRKTPGAFTQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAAMRSFSMDKLHYWRESASGMSSLAYFLSKDTVDHFSTVVKPLFYLSMFYFFNNPRSTVTDNYMVLLCLVYCVTGIAYVLAISLQPGPAQLWSVLLPVVLTLVATYDNEEDSSIVRFLSDLCYTKWALEAFVISNAKRYSGVWLISRCGALNSYGYDLKHYNYCLLLLVVTGAISRMLAFFCMVTFQKK* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0874 863 MobiDBLite consensus disorder prediction 138 166 - -
Lja3g0874 863 CDD ABCG_EPDR 251 477 - -
Lja3g0874 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 492 IPR027417 -
Lja3g0874 863 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 253 494 IPR003439 GO:0005524
Lja3g0874 863 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 25 860 - -
Lja3g0874 863 Gene3D - 241 491 IPR027417 -
Lja3g0874 863 Pfam ABC transporter 272 422 IPR003439 GO:0005524
Lja3g0874 863 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 25 860 - -
Lja3g0874 863 Pfam ABC-2 type transporter 451 863 IPR043926 GO:0140359
Lja3g0874 863 MobiDBLite consensus disorder prediction 88 113 - -
Lja3g0874 863 SMART AAA_5 279 480 IPR003593 -
Lja3g0874 863 ProSitePatterns ABC transporters family signature. 394 408 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0874 Lja-Chr3 8832380 8836707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0874 280 475 Calmodulin-binding Proteins AT2G36910 29.302 2.67e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0874 - - gmx:100809312 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0874 3 8832380 8836707 Lja3g0874 3 8832380 8836707 ECH