Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0871 ATGAGCGGCTCAAGGCGTGAATTGCATGTTACACAACAAACTCGGCGAGAGAAATTGAGGATTCAGAACAGTTTTGGTATCAACGTCGAACAAGTATCATCATCATCACACCCTGCAGTAGGGTTCAACAACAGCCTGGACCTTGTTGAAGTGAGAAACGTTAGAAATGGCGGCGACAACAACAATAACAACAACATGCTTGTTGATGATGCAGCAGCAGCAGCTTTTTACTCATCGGAAATGATAACACCGCCTCCTTTATCTGCTACTAGGAACATGTTGGAGTGTCAGGATCAGCTAGTAGAACCCTCTAGGCTAATGATGCCTCCTCAATATAGTTCATTATTCCCTCAATATTCATCTTCCAACCTTCATTCTTCCCCAAAACAAGATTGGAGAAACAGTAGTAGTAACCCCCATCATCAAGTCTCTGATTGGATGGTGAATAATTATGGAAGCTCCAGTTCTATCCCCAACATTAATTTCTTGGCTTCTGAGTTCAATGTTTCTGCAACTCAAAAGCAATTAGGTGAAATGCATTACCCTCCTCCTTCTTCTAATTCTTCACCTCCACTCTACCACAATGCTTTACAAGATATTTTCAAGTCTGCATCTCCCATCAATTCACATGGTTCAGTTCAAATGGCTAGTAGTTCCATAATGCACCATGGCATTTGGGGATCAGGAAATAGTAATAATAACAGTGAGCATGCACAGTATGGTAATTTGTGGCCATTGAGCAGTGATTGCAATAATCATCCTCATCAGGGTTTGTGTTTGTCACTTTCATCAAATTCACAATCCAAGCCTTCTATTGAAGAAGGGTCTACATCAGATGACCCTCAATATTCAAAGCCTGTGGGAATAGCAGTACCTTCTTCAAGCACTGCTAGTTTTAGAAACATTGGTCCTCTTGGCCCTTTTACTGGATATGCCACCATTCTCAAGAGTTCAAGGTACTTGAAGCCTTGCCAGCAGCTGTTAGATGAATATTGCTGTCAGAAATCTGAAAAATCTCCAAAATGGGTCTCCAGAGAAAACAGTGCTAATTCTGTTTCTGCTCTAGGTGGTGGTGGTGGTAGTAATTCAGGTTCAGGTAATTCATCCTCTATGCTGTATGCTCCTGCAGCTGCTGCAAAGGAAAACAGTAGCTGCAGCGGTGATGGCGGTGGAGGCAAGAGCAGTAGTAGCTTCTGTGGTTCTTCTTCTCGGCCCGAGTGCCAAAAGAACAAGGCAAAACTACTGTACATGCAAGAAGAGGTTACAAGGAGATACAAACAATACCATCAACAAATGCAAATGGTTGTTTCATCCTTCGACTCAGTAGCGGGACTCAGTTCCGCTACACCTTACATTTCCTTGGCTCTCAAGTCAGTGTCAAGACACTTCAGATGCTTAAAAAATGCGATAACAGATCAACTCAAGCTTACATGTGATGTATTGGGAGATGAATTTTCAATGCCAACCACTAGCACTAGTAGTAAAATGGTTGACAACAACATGGCTAGGCTAAGGTGCAATTTGGACCAAAGCTTTCACAAGAACAAATCTAACATGGACTTTTTTGAACCCCAACAACATGTGTGGAGGCCCCAAAGAGGATTACCAGAACGCGCAGTGGCAATTCTTAAGGCTTGGTTATTTGAACATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACTCAAACAGGTCTATCTCGAAACCAGGTTTCAAATTGGTTCATTAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATCCACATGCTTGAAACTAAAGGCACCACAACAGAAAACCACCAGAACTCGAGCAAAAACGAGGGAGCTTCCGCCGCTGACCAAGGTAACAACCACGCCGGAGTTGATCAACATATGAGCAAGTTTGGCAGTACTACTCATGCAATTGTCCCTGAAAAGCAATTTCAGCATTTGGAAATGGGATCATCCTCAACTGGGAATATTGTGGAAAAGAGAATAGAAGAAGATGAACAATGGAATATTCAATTAGAGAAGAGGTCTAAATATGAATGTGAGATTGCACCTGCACCAAGCATGGATGAGACATTGATGGGTTTTATGCCATACCGGCGCGGCGGGCTTGAGGTTGGCGGGCTTGGGCCTGTGTCTCTAACTTTGGGTTTAAGGCATGGAGTGGAAGGTACACAGCATCAGCAACAGCAGTTGCAGCATGAGGAGGAACTTAGACGCCAATTTGGAGGGCACATGATCCATGACTTCGTGGGATAG 2268 0.4352 MSGSRRELHVTQQTRREKLRIQNSFGINVEQVSSSSHPAVGFNNSLDLVEVRNVRNGGDNNNNNNMLVDDAAAAAFYSSEMITPPPLSATRNMLECQDQLVEPSRLMMPPQYSSLFPQYSSSNLHSSPKQDWRNSSSNPHHQVSDWMVNNYGSSSSIPNINFLASEFNVSATQKQLGEMHYPPPSSNSSPPLYHNALQDIFKSASPINSHGSVQMASSSIMHHGIWGSGNSNNNSEHAQYGNLWPLSSDCNNHPHQGLCLSLSSNSQSKPSIEEGSTSDDPQYSKPVGIAVPSSSTASFRNIGPLGPFTGYATILKSSRYLKPCQQLLDEYCCQKSEKSPKWVSRENSANSVSALGGGGGSNSGSGNSSSMLYAPAAAAKENSSCSGDGGGGKSSSSFCGSSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVSSFDSVAGLSSATPYISLALKSVSRHFRCLKNAITDQLKLTCDVLGDEFSMPTTSTSSKMVDNNMARLRCNLDQSFHKNKSNMDFFEPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGTTTENHQNSSKNEGASAADQGNNHAGVDQHMSKFGSTTHAIVPEKQFQHLEMGSSSTGNIVEKRIEEDEQWNIQLEKRSKYECEIAPAPSMDETLMGFMPYRRGGLEVGGLGPVSLTLGLRHGVEGTQHQQQQLQHEEELRRQFGGHMIHDFVG* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0871 755 MobiDBLite consensus disorder prediction 118 140 - -
Lja3g0871 755 Gene3D - 532 594 - -
Lja3g0871 755 Pfam Associated with HOX 314 471 IPR006563 -
Lja3g0871 755 MobiDBLite consensus disorder prediction 261 289 - -
Lja3g0871 755 SMART prehox3 309 472 IPR006563 -
Lja3g0871 755 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 103 725 - -
Lja3g0871 755 SUPERFAMILY Homeodomain-like 531 595 IPR009057 -
Lja3g0871 755 CDD homeodomain 529 590 IPR001356 GO:0003677
Lja3g0871 755 MobiDBLite consensus disorder prediction 599 631 - -
Lja3g0871 755 SMART HOX_1 529 593 IPR001356 GO:0003677
Lja3g0871 755 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 103 725 - -
Lja3g0871 755 Pfam Homeobox KN domain 546 585 IPR008422 GO:0003677|GO:0006355
Lja3g0871 755 ProSiteProfiles 'Homeobox' domain profile. 526 589 IPR001356 GO:0003677
Lja3g0871 755 MobiDBLite consensus disorder prediction 601 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0871 Lja-Chr3 8799984 8805223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0871 241 598 Homeobox Transcription Factor Family AT1G19700 38.619 1.90e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja3g0871 POX 2.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0871 - - gmx:100793050 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0871 3 8799984 8805223 Lja3g0871 3 8799984 8805223 ECH
Lja3g3693 3 73196757 73203085 Lja3g0871 3 8799984 8805223 PCT