Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0868 ATGATGATTTCTAAAACCATGATTCATCTTTGGTTTTTTTCTTTGACGTGCTTCAATGCATGCTCAGCTCAACTGGATTATGACCAATCAAGTTGCACTTCAAATGAAAGTTTCCCAGGGTCAAGGTACACCTGCAATTCAACTCATGATTCATGCAAAACATACTTGGTGTACAGAGCCAATGAACGTTTCAAGACCATTTCAGATATCTCAAACCTCTTCAACATGAGCTCTAGACAGGTGCTTCACATAAACAACCTCATATCATCTTCTGAGATACTTAAACAAGGTAAAGAGGTTCTTATTCCTGTTGATTGTACTTGCTCTGGAGAGTTTTATCAAGCTAGTCTCAGCTATAAAGTCCCTGAAATCACAACATTTTCAGAGATTTCATGTGAAAGCCCTGAAGTTGGTTCTGAGCTTCAAGTTCCTCTTAGATGTGCATGCCCTGGGAATTTCTCAAGTGGGAAGAAAGTGAAGTACCTTGTTACATACCCTGTAATTCTAGGAGATGATTTAGACCAATTGACTCAGAAATTTGGCATCTCACCTGAAGGTTTTTTGGAACAAAATCACTTGAACTCCTTGTCCACCCTTTACCCTCAAACTGTTGTTTTAGTTCCAATTGATGATGACCCCATCAGAATATTTGAAATTCCAGATTCTCCTTCTCCACCACCTGGTTTTCTTCCCACAAATCCAGTTAAGCTACATAAATCACTAGAATCATCACATTTGTATATTGCAGGATCTGTCTTAGGACTTGTGTTTTTTACAACACTGCTTGCAAGTGGACTCTACATGAAGAGAGTGAAAAAAAGTGATTCTGTACACTCATTCAATACAACAAACACCTTGTGGTCATCCCCAATGAGAACCTCTCCAGCATGGTGCCTCTCTCCAGATCTTCTTCTTGGAATAAAGTACTGTTTGGTCAATTACCACATAAAAGAGCTTGAAAAGGCCACCAAAAGTTTCAGTGAAGAAAATAAGATTGGTGATTTTGTCTATGAAGGCTTAATCAATAATATTGAGGTGATGATCAAGAGGATGAGGTTTGAAGACACAAGCCAGGTAATTGACTTACATTCCAAAATCAATCACATAAACATTGTGAACTTGCTTGGTGTATGTTATGGTGAGGGCAATGCTTCATGGTCTTATCTAGTTTATGAGTTGCCTAAAAATGGATGCTTGAGGGAGATTATATCTGATCCACTCAATCCTCTAAACTGGTACAGAAGGACACAAATAGCATTTGATATTGCAACATGTCTTTACTATTTGCATTACTGCTCTTTTCCTTCCATAGCTCACATGAATGTTAGTACTAGAAATATTTTCATCACTGCAAACTGGAGAGGAAAATTGGCAGATGTTGGTGGTTCAACCAAAAGAAACGACAGCACAGAAATTCCCAAAGGATTAGTGGAACCAGGGAACCTTTTGAAGGGTACAGTATCTCAAAAAGTTGACATTTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATCTCAGGAAAAGACAACTTTGATGGAAAAATGATTAAAGAATGCTTTGGACTTTTGTTGGGGGAAGCAAGTGAAGGGGGTTGTTTTGAAGGTTTGAGGAGTATCATGGATCCTAATCTGAAGGATTATTCTCTTCCAGAGGCTTTGTGTTTGTCTTTTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCAACTATGGATGATATCATGAAAGTCCTAGTCAAAATGGTTTAG 1752 0.3853 MMISKTMIHLWFFSLTCFNACSAQLDYDQSSCTSNESFPGSRYTCNSTHDSCKTYLVYRANERFKTISDISNLFNMSSRQVLHINNLISSSEILKQGKEVLIPVDCTCSGEFYQASLSYKVPEITTFSEISCESPEVGSELQVPLRCACPGNFSSGKKVKYLVTYPVILGDDLDQLTQKFGISPEGFLEQNHLNSLSTLYPQTVVLVPIDDDPIRIFEIPDSPSPPPGFLPTNPVKLHKSLESSHLYIAGSVLGLVFFTTLLASGLYMKRVKKSDSVHSFNTTNTLWSSPMRTSPAWCLSPDLLLGIKYCLVNYHIKELEKATKSFSEENKIGDFVYEGLINNIEVMIKRMRFEDTSQVIDLHSKINHINIVNLLGVCYGEGNASWSYLVYELPKNGCLREIISDPLNPLNWYRRTQIAFDIATCLYYLHYCSFPSIAHMNVSTRNIFITANWRGKLADVGGSTKRNDSTEIPKGLVEPGNLLKGTVSQKVDIFAFGVVLLELISGKDNFDGKMIKECFGLLLGEASEGGCFEGLRSIMDPNLKDYSLPEALCLSFLAKDCVADDPLHRPTMDDIMKVLVKMV* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0868 583 Pfam Protein tyrosine and serine/threonine kinase 344 577 IPR001245 GO:0004672|GO:0006468
Lja3g0868 583 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE 7 582 - -
Lja3g0868 583 SUPERFAMILY Protein kinase-like (PK-like) 309 579 IPR011009 -
Lja3g0868 583 ProSiteProfiles Protein kinase domain profile. 256 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0868 583 Gene3D Phosphorylase Kinase; domain 1 306 393 - -
Lja3g0868 583 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 582 - -
Lja3g0868 583 ProSiteProfiles LysM domain profile. 163 207 IPR018392 -
Lja3g0868 583 Gene3D Transferase(Phosphotransferase) domain 1 395 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0868 Lja-Chr3 8789611 8791565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0868 2 583 Receptor kinase-like Gene Family AT2G23770 29.487 6.08e-63 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja3g0868 PK_Tyr_Ser-Thr 3.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0868 - - lja:Lj1g3v4047410.1 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0868 3 8789611 8791565 Lja3g0868 3 8789611 8791565 ECH