Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0852 ATGGCTTCTGGTATTTCAAGATTTCTAAGTTTTCAAGATGACCATGAACTTCAAAAACTCCCAGCAACTAACGATGACAATGGAATCAAGCTTAATGGAAACCAAGTAGTTGAGCCTAGTGCCAGAAAGGGTCAGAAGAAGGAACTAAAGAAAACAAGAAAGTTCTTGAAAGCTAGAGTGTTGTCAAGAGTATTCTCAGAGGACTATGAGAGAGTAAAAAGAAGAATATTAGATCCCCAGGGACAAACCATTCACAAATGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTGTTCTTATATTTGCCACTAGTTAGAGATGAAGTGTGCATCGATATTGGAATAGAACTTGAAGTTACCCTCATAGTTATCAGATCAATGGCAGATTCCCTTTACATAATTCAGATTCTCATGAAGTTTCGTACGGCTTATGTCGCACCTTCTTCGCGCGTTTTCGGAAGAGGAGAACTTGTTATAAACTCTTCTAAGATAGCTACTAGGTACCTAAGAAAAGGTTTCTGGTTAGACTTTGTTGCCGCACTGCCTCTTCCTCAGGTGTTGATTTGGATTGTCATTCCCAGTCTTGGAGGTTCAACCATGACAAACACAAAAAATGTCCTTCGCTTTATCATCATCTTCCAATATTTACCGAGGCTATATCTGATTTTTCCACTTTCCTCCCAAATTGTAAAAGCTACTGGGGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACTTGATGCTTTACATGCTGGCTAGCCATATTTTAGGAGCTTGCTGGTACCTTTTATCAGTTGAAAGACAAGAAGCATGCTGGAGGAGAATTTGCGAGTTGGAGTCTTCTTGTCAATTTGAATTCTTTAACTGCAATAGAGTTATAGATTCCCTCAGGGTCTCCTGGTTTGTCACAAGTAATGTCACAAATTTATGCTCACCAAATGCTAAATTTTATCCGTTTGGTATATATGGTGATGCAGTGACATCCAAAGTTACAACTTCACCATTTTCCAATAGGTACTTCTTTTGTCTCTGGTGGGGACTGAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGTTGGAGAAATAATGTTTGCCATTGTCGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTTATTGGTAACATGCAAGGATACCTCCAATCAACAACTGTCAGGTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAGCAATGGATGCATCACCGGCAGCTACCTTCAGAACTAAGACAATCTGTGCGCAAATATGATCAATATAAATGGCTGGCAACACGAGGAGTAGATGAAGAAACTCTTCTCAAAGAACTTCCAGTGGATCTTCGGAGAGACATCAAGCGCCACCTTTGTCTTGAGCTAGTTCGAAGAGTGCCATTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGACTAAAGCCTGCATTGTGCACAGAAAGCACATGTCTAGTTCGTGAGGGTGATCCAGTGAATGAGATGCTCTTCATAATCAGAGGGCACCTTGACTCATACACCACCAACGGAGGCCGCACTGGTTTCTTCAACTCGTGCCGCATTGGCCCAGGTGATTTTTGTGGCGAGGAGCTTCTGACATGGGCCTTGGATCCACGACCAAGTGTCATCGCCCTTCCTTCTTCCACTCGAACGGTGAAGGCCATATCAGAAGTAGAGGCCTTTGCCCTCATAGCAGAGGACCTCAAGTTTGTTGCATCACAGTTCAGAAGACTGCACAGCAAGAAACTCAGGCACAAGTTCAGGTTTTACTCGCACCAATGGAGAACGTGGGCCGCATGTTTTGTGCAAGCTGCGTGGAGACGGTATAAGAAAAGAAAAGAAGCTGCTCAAGTGATGAGGGCCTGCAGGGAGAATGCCTCAGTTGCTGAGGCAGAAACACCAACGTTTGTGTATGCAATGAGGAGCACAAAGCAGGTTGTCAATGTGCATTCTTCTGGAGTTGTTAACTCTTTCCAGAAGCCAACAGAACCTGACTTCTTTGTTGATGAGTAA 2073 0.4293 MASGISRFLSFQDDHELQKLPATNDDNGIKLNGNQVVEPSARKGQKKELKKTRKFLKARVLSRVFSEDYERVKRRILDPQGQTIHKWNKIFLVACLVSLFVDPLFLYLPLVRDEVCIDIGIELEVTLIVIRSMADSLYIIQILMKFRTAYVAPSSRVFGRGELVINSSKIATRYLRKGFWLDFVAALPLPQVLIWIVIPSLGGSTMTNTKNVLRFIIIFQYLPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSVERQEACWRRICELESSCQFEFFNCNRVIDSLRVSWFVTSNVTNLCSPNAKFYPFGIYGDAVTSKVTTSPFSNRYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIVVATLGLVLFALLIGNMQGYLQSTTVRLEEWRVKRTDTEQWMHHRQLPSELRQSVRKYDQYKWLATRGVDEETLLKELPVDLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTESTCLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVIALPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKKLRHKFRFYSHQWRTWAACFVQAAWRRYKKRKEAAQVMRACRENASVAEAETPTFVYAMRSTKQVVNVHSSGVVNSFQKPTEPDFFVDE* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0852 690 SUPERFAMILY cAMP-binding domain-like 408 604 IPR018490 -
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 391 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 441 448 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 373 384 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 347 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 142 151 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 PRINTS EAG/ELK/ERG potassium channel family signature 259 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja3g0852 690 SMART cnmp_10 478 610 IPR000595 -
Lja3g0852 690 ProSiteProfiles IQ motif profile. 615 644 IPR000048 GO:0005515
Lja3g0852 690 Pfam Ion transport protein 87 405 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g0852 690 SUPERFAMILY Voltage-gated potassium channels 78 400 - -
Lja3g0852 690 Gene3D - 90 402 - -
Lja3g0852 690 Gene3D Jelly Rolls 476 597 IPR014710 -
Lja3g0852 690 ProSiteProfiles cAMP/cGMP binding motif profile. 478 563 IPR000595 -
Lja3g0852 690 CDD CAP_ED 478 610 IPR000595 -
Lja3g0852 690 PANTHER PROTEIN CNGC15A 38 687 - -
Lja3g0852 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 38 687 - -
Lja3g0852 690 Gene3D Helix hairpin bin 406 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0852 Lja-Chr3 8663688 8669775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0852 54 686 Ion Channels AT2G28260 76.814 0.0 1006
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0852 K05391 - gmx:100791992 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0852 3 8663688 8669775 Lja3g0852 3 8663688 8669775 ECH
Lja3g3700 3 73325419 73329197 Lja3g0852 3 8663688 8669775 PCT