Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0846 ATGAAGGAAGGTGAGAAGAGCTTGGATCCGCAACTATGGCACGCGTGTGCAGGTGGAATGGTTCAAATGCCTCAGGTGAACTCCAGAGTTTTCTACTTTCCACAAGGGCATGCGGAACATGCTCACACCAACGTTGATCTGAGAGGTTCATTGCCACCGTTCATCCTCTGCAACGTTGCAGCAGTGAAATTCATGGCTGACCCAGAAACCGATGAGGTTTTCGCCAAGATGAGGCTCGTTCCTCTGAGGAATTCAGAGCTTGGTTTGGGAGAAGAAGGAGGTGAAGTGTTGGAAAATTCAGAGAAGCCTGCGTCGTTTGCTAAGACTTTGACCCAATCGGATGCTAACAATGGTGGGGGGTTTTCTGTTCCGAGGTACTGTGCGGAGACAATTTTTCCCAGGCTGGATTATGCGGCGGAACCGCCGGTTCAGACGGTGGTGGCGAAGGATGTTCACGGCGAGCTTTGGAAGTTTAGGCATATATATAGAGGCACGCCGCGTAGGCACTTGCTGACCACAGGGTGGAGTACTTTTGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTGTGGTGTTTTTGAGGGCTGAGAATGGGGAATTGTATGTTGGGATTCGTAGAGCAAAGAAGGGAATTGGTGGTGGTGGTGGTGGTGGTTCTGAGGTTTCATCTGGGTGGAGCTCAGCTTCAGGATCAGGGAATTGTGGGATTGGACCTTATGGGGCATTCTCTTTTTTCTTGAGAGAAGAGAACAAGACATTGAGGAATGGTTGTGTTGGTGGTGGTGGTGATTTGAGTGGGAGGGCAAGAGTGAGACCTGAAGCTGTTATTGAAGCTGTGACTCTAGCTGCTAGCAACCAACCATTTGAGGTTGTTTATTATCCAAGAGCTAGCACTCCTGAGTTTTGTATTAAGGCTTCGGCTGTGAAGGCGGCGATGAGGGTTCAATGGTGCTCTGGGATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGGATTAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTGTTCGCTGGCCTAATTCCCCATGGCGGCTTCTTCAGGTTAATTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCGAACATGCCAGCCATCCATTTCACACCCTTCTCTCCACCGAGAAAGAAGCTGCGGTTTCCGCAGCACCCCGACTTCCCCCTTGATGTTCGTTTTCCGACACCAACGTTTTCAGGCAACCAGCTCGGGCCAAACGTGCCCTTGATCTGTTTATCTGATAATGCTCCTGCAAGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTATCAGATATCCACCTTAGCAATAAACTACAGTTGGGGTTGTTTCCAACTAACATCCAGCTTCATAGTGGGATTTCAAATGGCAACATGACCAACCATGATGAGAGCAAGGAAAGCTTATCATGCTTGCTGACCATGGGAAAATCTATTAAAAGTTTGGAGAAATCTGTTGATGTTAAGAAACACCAATTTTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAAATCTCTAATAGCTGCTCTAGAGAAGTGTTGTCTCATAATAATTCAGGAAAAAATTCACTAGCTGTGAATGAGGACAAAGAGAAGTGCTTTTTTGATTCACCAGGAAAAGCTTCTAGTGCTGAGTTTTCTTGGCAACTTGGCTTGGATACTGGTCATTGCAAGGTTTTCTTGGAATCAGAAGATGTAGGAAGAAGCCTAGACTTATCATGTCTTGGTTCTTATGAAGAGCTGTACATGCGACTTGCCAATTTGTTTGGCTTAGAAAGATCTGAGATGTTGAACCATGTCCTCTACCGCGATGCAACTGGTGCTGTTAAGCAAACTGGAGAAGAACCTTTCAGTGATTTCATGAAGACAGCAAAAAGATTGACAATTTTGACTGACTCAGGCAGCAAAAGTATTAGGGCCTGGATTACAGGAACTCGGAATGGTGAACATGGATTGGATGCATCAAATCAAACAGGTCCTCTAAGCATATTTGCTTAG 2076 0.4639 MKEGEKSLDPQLWHACAGGMVQMPQVNSRVFYFPQGHAEHAHTNVDLRGSLPPFILCNVAAVKFMADPETDEVFAKMRLVPLRNSELGLGEEGGEVLENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGELYVGIRRAKKGIGGGGGGGSEVSSGWSSASGSGNCGIGPYGAFSFFLREENKTLRNGCVGGGGDLSGRARVRPEAVIEAVTLAASNQPFEVVYYPRASTPEFCIKASAVKAAMRVQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVNWDEPDLLQNVKRVSPWLVELVSNMPAIHFTPFSPPRKKLRFPQHPDFPLDVRFPTPTFSGNQLGPNVPLICLSDNAPASIQGARHAQIGISLSDIHLSNKLQLGLFPTNIQLHSGISNGNMTNHDESKESLSCLLTMGKSIKSLEKSVDVKKHQFLLFGQPILTEQQISNSCSREVLSHNNSGKNSLAVNEDKEKCFFDSPGKASSAEFSWQLGLDTGHCKVFLESEDVGRSLDLSCLGSYEELYMRLANLFGLERSEMLNHVLYRDATGAVKQTGEEPFSDFMKTAKRLTILTDSGSKSIRAWITGTRNGEHGLDASNQTGPLSIFA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0846 691 SMART B3_2 106 208 IPR003340 GO:0003677
Lja3g0846 691 CDD B3_DNA 105 206 IPR003340 GO:0003677
Lja3g0846 691 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g0846 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g0846 691 Pfam B3 DNA binding domain 106 207 IPR003340 GO:0003677
Lja3g0846 691 ProSiteProfiles B3 DNA-binding domain profile. 106 208 IPR003340 GO:0003677
Lja3g0846 691 Gene3D - 315 389 - -
Lja3g0846 691 ProSiteProfiles PB1 domain profile. 580 660 IPR000270 GO:0005515
Lja3g0846 691 SUPERFAMILY DNA-binding pseudobarrel domain 100 207 IPR015300 -
Lja3g0846 691 Gene3D - 579 664 - -
Lja3g0846 691 Gene3D - 104 208 IPR015300 -
Lja3g0846 691 PANTHER AUXIN RESPONSE FACTOR 2 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0846 Lja-Chr3 8599761 8603774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0846 1 664 B3 DNA Binding Superfamily AT4G30080 58.370 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g0846 B3 5.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0846 - - lja:Lj0g3v0141269.1 1295.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0846 3 8599761 8603774 Lja3g0846 3 8599761 8603774 ECH
Lja1g0858 1 8432204 8436441 Lja3g0846 3 8599761 8603774 ECH
Lja5g2666 5 53206624 53209573 Lja3g0846 3 8599761 8603774 ECH
Lja3g3707 3 73501618 73506029 Lja3g0846 3 8599761 8603774 PCT