Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0838 ATGGCGAAGGATACTGAGGTTCAAGAACAGGGTGAATACTCTGCAAAAGACTACCAGGATCCACCTCCGACTCCGCTTTTCGACCCGGAGGAGCTGACAAAGTGGTCCTTCTACAGAGCTCTCATAGCTGAGTTCATAGCCACACTTCTCTTCCTTTATGTAACGGTTTTAACTGTCATTGGCCACAGCAGGCTCAACAGTGCTGATCCTTGTGATGGTGCTGGCATCTTGGGTATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCTGCAGTGACATTTGGGCTGTTCATAGGACGCAAGGTGTCTTTGATAAGGGCACTTCTATACATAGTAGCACAGTGTTTAGGTGCAATCAGTGGTGTTGGATTGGCCAAGGCCTTCCAAAAATCATTCTACAACAGGTACGGTGGCGCTGCCAATTTTGTGCAACCTGGTTACAGCAACGGCACCGCTTTGGGTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGAAACGCTAGGGATTCCCATGTTCCTGTTTTGGCTCCACTTCCTATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCTGTTACTGGTACTGGAATTAACCCAGCAAGGAGTTTTGGAGCTGCTGTCATCTACAACGAAGACAAAATCTGGGATGACCATTGGATTTTCTGGGTTGGACCATTTATTGGAGCTCTAGCAGCTGCAATCTACCACCAATACATTCTCAGAGCAGCAGCTATCAAAGCTCTTGGATCCTTCAGGAGCAACAATTAA 846 0.474 MAKDTEVQEQGEYSAKDYQDPPPTPLFDPEELTKWSFYRALIAEFIATLLFLYVTVLTVIGHSRLNSADPCDGAGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFIGRKVSLIRALLYIVAQCLGAISGVGLAKAFQKSFYNRYGGAANFVQPGYSNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEDKIWDDHWIFWVGPFIGALAAAIYHQYILRAAAIKALGSFRSNN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0838 281 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g0838 281 SUPERFAMILY Aquaporin-like 30 267 IPR023271 -
Lja3g0838 281 Gene3D Glycerol uptake facilitator protein. 24 281 IPR023271 -
Lja3g0838 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Lja3g0838 281 PANTHER AQUAPORIN PIP2-4-RELATED 1 280 - -
Lja3g0838 281 CDD MIP 39 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 Pfam Major intrinsic protein 31 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0838 281 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Lja3g0838 281 TIGRFAM MIP: MIP family channel proteins 43 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0838 Lja-Chr3 8511872 8515271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0838 6 280 Major Intrinsic Protein MIP AT4G35100 80.435 9.76e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0838 K09872 - gmx:100818032 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0838 3 8511872 8515271 Lja3g0838 3 8511872 8515271 ECH
Lja1g0860 1 8479992 8481585 Lja3g0838 3 8511872 8515271 ECH
Lja3g3718 3 73647659 73650341 Lja3g0838 3 8511872 8515271 PCT