Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0832 ATGAGTTCAGAGGAAAAGCATGTCAGTGAAGAAGATGCTGCAGCTTCTTGCAGAAGAACAGTTTCTCTTGCTGTTAACAAGGGTGAAGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCCAGGAAGAGACAGAATCTTCAACTAGAAGTACCATTAAGAACACCTGAAGAATGTTCCCAAGATTTTGTTGCAATCAAAATGCCACAAACACCAAGTCCCACACCTACCCCTACTCCTAAGAGAGTGAATTTCCTTGTGTCTTCTCGCTCTGTTGATACTCCAACAAATAATTCACCTGGGAATTCAGCATCAAAAGGAAGATCATCCATAAGAAGCCTCCTACCAAAATTGAGCTTCCGGAATCGGACACCAGCAGATATTGAAAAGGCTACAACACCAACTCCAGAAGTTTCCTCTTCAGGTGTTCGAGAAAGGCCTTTAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAGAGAACATCGTCGTTACCGGTAGAAGAAATTGGACATTCAAACGCAGAATCTGCTCATGGTGGAAGCGTTGGGGGTCATCTAAATAAGAGAGAAACTCAGCGAAAGATAGCTCGTTCTCTTTCAGTGCCTGTCAACAACAAAGAAAAGAGCATAAGGAGGATGGACTCATTTTTCCGCGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGACCTCATCCCCGGAAAAGGATATAGAAAATGAAGATGATGATGGTGAAGATATACCTGAAGAGGAGGCTGTGTGTAGAATCTGTTTTGTTGAACTAAATGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTTTGAAGGGTAACAAGACCTGCGATGTTTGCAAGTCAGAAGTTCAAAACCTACCTGTAACTCTATTACGGATTCAAAGTGTTCGAAATCGGATTATTGGAAGTAGGTCTCAACTGGAAGATTTAGATGGATACAGGTTTTGGCAGGAAGTTCCGGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTGGAGCAGCTATTGGTTTCAAAAATGGGAACTGGCGCGATTGCCATATCTCTTCCATTTTCTTGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAAGAGCAGGTTCATCTGGATCTATGCATCCGTCCAATTTGCTCTGGTGGTTCTCTTCGCGCATATATTTTACTCTGTGGTTCATGTGCAAGCAGTTTTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTGATGTGTGGGAGTTCTATCCTTGTGGAGGTTTTTAGATGGAGGAGGAGATGGCAAGCTTTATCAGAGCAGCAACAACTACATGGCCCTCAAACTGCAAACACACCACGTTCAGGCAGTGTTACTCAACCTGTGGTGCAAAATCAACAGAACTGA 1497 0.4295 MSSEEKHVSEEDAAASCRRTVSLAVNKGEDPMGITEETTHVPPRKRQNLQLEVPLRTPEECSQDFVAIKMPQTPSPTPTPTPKRVNFLVSSRSVDTPTNNSPGNSASKGRSSIRSLLPKLSFRNRTPADIEKATTPTPEVSSSGVRERPLISRSLSLSKIFTPRIKRTSSLPVEEIGHSNAESAHGGSVGGHLNKRETQRKIARSLSVPVNNKEKSIRRMDSFFRVVPSTPRVKEGNELLTSSPEKDIENEDDDGEDIPEEEAVCRICFVELNEGGETFKLECSCKGELALAHKECAIKWFSLKGNKTCDVCKSEVQNLPVTLLRIQSVRNRIIGSRSQLEDLDGYRFWQEVPVLVIVSMLAYFCFLEQLLVSKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMCGSSILVEVFRWRRRWQALSEQQQLHGPQTANTPRSGSVTQPVVQNQQN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0832 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Lja3g0832 498 MobiDBLite consensus disorder prediction 1 57 - -
Lja3g0832 498 SMART ringv_2 264 313 IPR011016 GO:0008270
Lja3g0832 498 MobiDBLite consensus disorder prediction 128 142 - -
Lja3g0832 498 CDD RING_CH-C4HC3_MARCH 265 313 - -
Lja3g0832 498 MobiDBLite consensus disorder prediction 91 119 - -
Lja3g0832 498 PANTHER OS02G0165000 PROTEIN 26 483 - -
Lja3g0832 498 MobiDBLite consensus disorder prediction 235 256 - -
Lja3g0832 498 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 483 - -
Lja3g0832 498 Pfam RING-variant domain 265 312 IPR011016 GO:0008270
Lja3g0832 498 MobiDBLite consensus disorder prediction 472 498 - -
Lja3g0832 498 ProSiteProfiles Zinc finger RING-CH-type profile. 257 319 IPR011016 GO:0008270
Lja3g0832 498 MobiDBLite consensus disorder prediction 91 147 - -
Lja3g0832 498 SUPERFAMILY RING/U-box 261 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0832 Lja-Chr3 8440875 8446097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0832 249 319 C3H Transcription Factor Family AT2G37950 45.833 7.80e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0832 - - gmx:100788108 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0832 3 8440875 8446097 Lja3g0832 3 8440875 8446097 ECH
Lja3g3722 3 73726298 73731297 Lja3g0832 3 8440875 8446097 PCT