Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0831 ATGGCGGAGGAGGAACCTGTTCTCATCACTGAACCCTCTTCCCCTAAAACCCTAGACCCAATCCACGCTCACGGTTCCACCACCGAATCGCACCAATCGCCTCCGCAAGATGCTCTATCCAATCAACCAAACGACGACGTCGCTCCGACCGAGAAGCGAAAACGAGACGACGGCGACGGTGACGGTGAGCGTAAGGTTCACCCGCTGTGGAAGACTAGCCTGTGCTCTTACTTCAGGAGCCATAACGGCTCCTGCAGCCACGGCACTACCTGCCGCTTTGCGCACAGCGAGGAGGAGCTCCGCCTTCGTCCTGACAACACGTGGGATCCGACGTCCGAGCGGGCGAAGAAGGCACAGAAGTCTGAGACTGGTGAGAAACGCGACGTTGCGGATCGCGTGATGATGACTGAGGCCGTGGATGATGACGACGAGGACGGCGGCGATGACGCGCTCAGAAAATGCTTGGTGCACTTGCCGAGGAAGTGGAGCTCTGAGAATTTCAGGAAGTTTCTCAACGATGAGGGTGTGCCGTTTAAGTATGCGAAGAAAAAGACTGGTATGATGATCGGTTTCGTTACTTTCGAAGATGAAGAGCAAATGAAGAGTTCCTCAAAGGAGTTAGACGGAAAATCTTGTGGCGCGAAAAGCTTAGAGGTTGCTGATGTGATTCGTCGATCATCTGAGAAGAAGAATATTGGTGTTCCTGCATTAAATAAGGAGAATTCAGAAAATGGGACATCGGATGCTGAAATGAATGATGATGTTGTGGCAGTTGATGGTTCCTCAAAGAAGAGAACCGTGCGTGATGTGGTGACTCCTCTTGCTGATGTGCCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCTCTCTCATGCAGATTCTGAAAAAACTGACTAGGAATGTGCGCAAAGCTATTCCAACTGGTGTTCCTCGTCCTGAGTGGATTCTCAAGTCTAGCGAAATAGGTGGTTTACCATGCAAACTAGAGGGTATTATTGCATCACCAATTGTAAATGGATATCGAAATAAATGTGAATTTTCAGTTGGATATTCTCTGGAAGGCAAAGTGACAGTGGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCTACCATAGCTCGCAAATATGCTACTATCTTTCAGGAATTTCTGCAGCATACTGATTTACCAGTTTGGAACAGATTCAAAAATACTGGCTTTTGGCGTCAATTGACGGTTCGAGAAGGGAGGGCAAATGCGAATGTTGGGGATGCTGAAACTTTTGATGGTATTGCAGAGGTCATGCTTATGGTGCAGGTTTCTACTGCAAACTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGAATTTGTAGCAGGAGCTAATTTGCATTGTCCAGTGTTGCCCCTTTCGGCTCTGGTTATTCAGGATCACGTAGGAATATCCAATGTAGCTCCAGCTGATGCACCACTGCGTTATCTTCCCATTTCTAAAGCAGCCGGTGATACTGAGATGGATGCAAACAATAATGCCATGGATGTTAGAATCCATGATTATATCAACAATCTCCGGTTCTCAATATCTCCGACAGCATTTTTTCAGGTCAACAGTCTTGCCGCTGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCCGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTTACGTTAGCACACCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCATCTGCCATATCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAACTTTAGATTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTATTAAGGGAGTACATAAATGTGCCCAAGGAACAAGTTGATGATCCCAGTATCTCTGAAAATGACAATGACATTCCTGAGGAAATTGCTTGCCCAGAGCCTGAAAAGGGTGAATTGGCATCTGATTGTCCGGAAAATAACAGTTCAGAAGCTGTAAGTGAGGTTCAGAAGGGTAGCACTTCAGAAGGGTACATAAATGTGCCCAAGGAACAAGTTGATGATCCCAGTATCTCTGGAAATGGCAATGACATTCCTGAGGAAATTGCTTGCCCAGAGCCTGAAAAGGGTGAAGCGGCATCTGATTGTCCGGAAAATAACAGTTCAAAAGCTGGAAGTGAGGTTCAGAAGGGTAGCACTTCTGAAAATGGAAATACTTCCAGGAAACAGTTTAAAAATGTTGTTGCTATTGTTGATCCACCACGTGCTGGACTGCATCCAACTGTGATTAAAGCTTTGAGGACTCATCCAGGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGCACGCCTTCCCCTGCAACTAATGAGAAAGTAAAAAAAGACAATAGAGGATGGAGAAACAGGAGCATGGCAGGTCTAGCACGGCATCGAGCCAAGTCCATGCCCATCTCAGAGGCCTTCCAACCAGTAAAAGCTATGGCCGTTGATCTTTTTCCACACACTCCACACTGTGAACTGGTTATGCTTCTTGAGAGGTAG 2613 0.4631 MAEEEPVLITEPSSPKTLDPIHAHGSTTESHQSPPQDALSNQPNDDVAPTEKRKRDDGDGDGERKVHPLWKTSLCSYFRSHNGSCSHGTTCRFAHSEEELRLRPDNTWDPTSERAKKAQKSETGEKRDVADRVMMTEAVDDDDEDGGDDALRKCLVHLPRKWSSENFRKFLNDEGVPFKYAKKKTGMMIGFVTFEDEEQMKSSSKELDGKSCGAKSLEVADVIRRSSEKKNIGVPALNKENSENGTSDAEMNDDVVAVDGSSKKRTVRDVVTPLADVPYADQLEQKKSSLMQILKKLTRNVRKAIPTGVPRPEWILKSSEIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGKVTVGFMLGNFREGVTAVEEAVDCPNVSTIARKYATIFQEFLQHTDLPVWNRFKNTGFWRQLTVREGRANANVGDAETFDGIAEVMLMVQVSTANFDDAQVAAEFKRLAQEFVAGANLHCPVLPLSALVIQDHVGISNVAPADAPLRYLPISKAAGDTEMDANNNAMDVRIHDYINNLRFSISPTAFFQVNSLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAISDAHRNAEINGIKNFRFICSKAEDVMGSLLREYINVPKEQVDDPSISENDNDIPEEIACPEPEKGELASDCPENNSSEAVSEVQKGSTSEGYINVPKEQVDDPSISGNGNDIPEEIACPEPEKGEAASDCPENNSSKAGSEVQKGSTSENGNTSRKQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPATNEKVKKDNRGWRNRSMAGLARHRAKSMPISEAFQPVKAMAVDLFPHTPHCELVMLLER* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0831 870 MobiDBLite consensus disorder prediction 20 46 - -
Lja3g0831 870 ProSiteProfiles Zinc finger C3H1-type profile. 69 98 IPR000571 GO:0046872
Lja3g0831 870 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 85 870 - -
Lja3g0831 870 CDD RRM_SF 154 219 - -
Lja3g0831 870 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 273 870 IPR029063 -
Lja3g0831 870 Gene3D Vaccinia Virus protein VP39 505 869 IPR029063 -
Lja3g0831 870 MobiDBLite consensus disorder prediction 728 754 - -
Lja3g0831 870 MobiDBLite consensus disorder prediction 669 693 - -
Lja3g0831 870 CDD AdoMet_MTases 570 658 - -
Lja3g0831 870 Pfam Methyltransferase domain 568 626 IPR025714 -
Lja3g0831 870 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 270 870 IPR010280 GO:0006396|GO:0008173
Lja3g0831 870 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 85 870 IPR045850 -
Lja3g0831 870 Coils Coil 280 300 - -
Lja3g0831 870 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 97 IPR000571 GO:0046872
Lja3g0831 870 ProSitePatterns RNA methyltransferase trmA family signature 1. 765 797 IPR030390 -
Lja3g0831 870 Gene3D - 64 102 - -
Lja3g0831 870 Pfam tRNA (Uracil-5-)-methyltransferase 756 805 IPR010280 GO:0006396|GO:0008173
Lja3g0831 870 SMART c3hfinal6 69 97 IPR000571 GO:0046872
Lja3g0831 870 MobiDBLite consensus disorder prediction 102 128 - -
Lja3g0831 870 MobiDBLite consensus disorder prediction 47 66 - -
Lja3g0831 870 MobiDBLite consensus disorder prediction 662 754 - -
Lja3g0831 870 SUPERFAMILY CCCH zinc finger 67 102 IPR036855 GO:0046872
Lja3g0831 870 MobiDBLite consensus disorder prediction 1 66 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja3g0831 tRNA_U5-meth_tr 4.3e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0831 K15332 - gmx:100777601 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0831 3 8418859 8426158 Lja3g0831 3 8418859 8426158 ECH