Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0830 ATGTTTGAGAAGACGATTTCTTTTGCCAAAGCAATGGGGTGCTGTAATTGCTTTGGGTTTATCAGGAGACGGAGCCGTCGAAGGGCTAAGCCTGCTGTCAACAATAATGATCATGATCTTTCTCAGGAGCTTTTGTTGGATGATGACACTGACGACGACGAAGAGCGTTTCTATGCTAACGCCCTTAGTGGAGATGGTAGTGAGGTGCAAAATCGTCCCAAACGGTCGGAGGATATTTTGAACACGAGGGTAGAGAATGGCTTGATTTGTAGGCAGTTTCCTGTTAAGGAGACTGACGTAGTTTTTCGCTCTGAGGATGAAGATGGAAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTACGGGAAAGTGGCTCTTTATCGAAGTTCTCTTGATGGAAAGCATTATGCAATTAAGTCCTTTAATAAGTCTCATTTACGGAAGCTTCGAGTTGCACCCTCGGAAACTGCCATGACTGATGTTCTACGTGAGGTTTTCATCATGAAAATGCTGCAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAATCAGATAACTTCTACATGGTGCTTGAATATGTGGAAGGAAAATGGGTTTGTGAGGGTTCGGGTCCCACTTGTGGCTTAGGTGAAGAGACTGCTAGGAGATACCTGCGTGACATAGTTTCTGGATTAAGATATCTCCATGCACATAATATAGTACATGGAGATATTAAACCTGATAATCTATTGATTACTCGTCATGGTACAGTGAAGATAGGAGATTTCAGTGTCAGCCAGGCTTTTGAGGATAATAATGATGTTCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCCGAATGTATTTTAGATATCACCTATCATGGTAAAGCTGCAGATACATGGGCAGTAGGAGTTACTTTATACTGTATGATAGTGGGTGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCTATAGAACTCCCAAATGATATGAATCCGCAGTTGAAGAAATTAATAGAAGGACTACTTTTCAAAGATCCAACACTAAGGATGACATTGAGCGATGTCGCTGTAGATAGCTGGGTTATTGGAGATGATGGACCAATTCCTGAGTACCTTTGCTGGTGCAAGAGGAAGAACATGGAGGGGGAATACAATGTTGAGAGCAAAATACTTGCTTGA 1227 0.4148 MFEKTISFAKAMGCCNCFGFIRRRSRRRAKPAVNNNDHDLSQELLLDDDTDDDEERFYANALSGDGSEVQNRPKRSEDILNTRVENGLICRQFPVKETDVVFRSEDEDGNKMINEYIREYKIGSGSYGKVALYRSSLDGKHYAIKSFNKSHLRKLRVAPSETAMTDVLREVFIMKMLQHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVSGLRYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDNNDVLRRSPGTPVFTAPECILDITYHGKAADTWAVGVTLYCMIVGEYPFLGDTLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPIPEYLCWCKRKNMEGEYNVESKILA* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0830 408 Gene3D Phosphorylase Kinase; domain 1 110 212 - -
Lja3g0830 408 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Lja3g0830 408 Gene3D Transferase(Phosphotransferase) domain 1 215 383 - -
Lja3g0830 408 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 405 - -
Lja3g0830 408 SUPERFAMILY Protein kinase-like (PK-like) 112 387 IPR011009 -
Lja3g0830 408 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 405 - -
Lja3g0830 408 SMART serkin_6 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0830 408 ProSiteProfiles Protein kinase domain profile. 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0830 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Lja3g0830 408 CDD STKc_LKB1_CaMKK 122 377 - -
Lja3g0830 408 Pfam Protein kinase domain 118 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0830 Lja-Chr3 8407660 8412962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0830 106 377 CBL-interacting serine-threonine protein kinases AT5G10930 32.727 5.24e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lja3g0830 Pkinase 4.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0830 K00908 - gmx:100789178 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0830 3 8407660 8412962 Lja3g0830 3 8407660 8412962 ECH