Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0825 ATGGCTTCCTCCAACAATTCCAAATCTCAAAACAACAAGAAAATCAAAACCGAAAAGGAAAGAGCCATCATCGACAAGAAGAACAAGAAACCGAAGAAGGAGAAGGAGGAGGAGAGCAAAATCACCAAGAACAAGAAGCTCAAGCTCACCAATGGCAATGGCAATGGAAATTCCAAAAAACACCACCGTCAACAAGAACAGAAGCACGAGGAGGAAGATGAAGAAGAGGACATTGAAGAGGCGAAATCGCACGTGTTTCCGATGAATCGTATCAGGACTATGATCAAGGGCGAAGATCCTGAAGCGCGTGTTTCTACGGAAGCTATTTTGGCCATCAACAAAGCTGCGGAGAAGTTCCTTGAACAATTCACACAGGAAGCTTATACTCGTGCTGTTCAGGATCGTAAGAAATCTCTCAGTTACAATCACCTAGCTCATGTTGTTAGTAAGCAGAGGAGATATGACTTTCTTTCTGATTTTGTTCCTGAAAAAGTGAGAGCTGAGGATGCATTGAGAGAGATAAGTTCAAGAGGGAACGGGGGAGGTTAG 549 0.4353 MASSNNSKSQNNKKIKTEKERAIIDKKNKKPKKEKEEESKITKNKKLKLTNGNGNGNSKKHHRQQEQKHEEEDEEEDIEEAKSHVFPMNRIRTMIKGEDPEARVSTEAILAINKAAEKFLEQFTQEAYTRAVQDRKKSLSYNHLAHVVSKQRRYDFLSDFVPEKVRAEDALREISSRGNGGG* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0825 182 MobiDBLite consensus disorder prediction 12 45 - -
Lja3g0825 182 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 177 - -
Lja3g0825 182 MobiDBLite consensus disorder prediction 1 85 - -
Lja3g0825 182 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED 5 177 - -
Lja3g0825 182 Gene3D Histone, subunit A 51 163 IPR009072 GO:0046982
Lja3g0825 182 Coils Coil 61 84 - -
Lja3g0825 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 148 IPR003958 -
Lja3g0825 182 SUPERFAMILY Histone-fold 52 157 IPR009072 GO:0046982
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0825 54 147 CCAAT-HAP5 Transcription Factor Family AT1G07980 37.234 1.09e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lja3g0825 CBFD_NFYB_HMF 8.1e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0825 - K03506 lja:Lj3g3v3086110.3 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0825 3 8348283 8350944 Lja3g0825 3 8348283 8350944 ECH