Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0817 ATGATGTCTCAAGAAGCCTTTTCTATTCCCTCCAACAACACCATGAGATCAGACACCTTGGCAAATCATGTTCAAGACCCAAACCCTAATAATCCAAACAACCCTAATCCAAACCCAGCAAAGAGAAAGAGAAATCTACCAGGCAATCCAGATCCGGATGCAGAAGTGATAGCTTTGTCTCCGAAGTCTCTGATGGCGACTAACCGCTTCCTCTGCGAAATCTGTAACAAGGGGTTCCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGACACAACCTGCCTTGGAAGCTGAAGCAAAGGGCCAACAAAGATCAAGTGAGGAAGAAGGTTTACGTGTGCCCAGAGAAGAGTTGTGTCCACCACGACCCTAGTAGAGCACTTGGAGACTTGACAGGAATCAAGAAACACTTCAGCAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCCAAGAAATACGCTGTTCATTCCGATTGGAAGGCCCATGCCAAGATTTGTGGGACTAGAGAGTACAAGTGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCTTTTTGTGACACTTTGGCTGAAGAAAGTGGGAGGATAACTAGTACTATTCCAGCAGCTTTAACCAACTTCAGAACCAATCATTTTACAAATGCTCAACCTCTTAAGATTCCTCAGATTTTTCCTGGGTTTCACTCAGAATTTGGTGGCTCAGGGTCAGAACCATTGAGGCTTCCACCATGGCTAGACCAACAGGTCAATAATTCCCAGCTTCACAATCATCCACTTAACTTCACAACCAAACCACCAAGTGCTGCAAATTTCTCATCATCTGATGCAGTGGACATGTTTGGATCACAACAACAAGAGACACAGTGGCTGAATTTCAGATTCCCAGCTGAAACGTCATTTCCTGGTAATTCCAATAACAACAACAATAATAATCTATTGTTGTTGCCACATGGACTTAAGCAAGAAGAACAAGAAGAAAACAAAGGAGATCACTTGTCGCATTCGCATAGTGTGCAGGTAAGCTCTTTGTACTTGAGTAATCATCAGAATCAGCTGCAACAACAAACTCACATGGGATCTATGACGGCGAGGATCAACGACGACGACCACACAGTAGTACCCTCCTTCAACAACATTGTTGAGGTTCAGAAATTGTTCAAGCAAGCTGATGAGAATAGTAACCTGAACAGGTTAGTGAGTTTGGAAACCAGCGGCAACAACAACAACAACAACGACCTCGGAGGTGGTGGTGGGTATTTATTAAATGATCATCCACTATCAATGATGGGCAATAAGCAAGAACTACATTCAAGCTCAGATAACAAAAACCAGCTGAGAGACTTTCTGGGTGTTGGAGTTAACTCAATAAGCAGGCCCTTCTTGCTGCAACAAGACTTTGCTGAATTCAATGCAATGGAAACCGCAACAAACCAGAGCCAGTACAATGGACACTACTGCTAG 1488 0.4422 MMSQEAFSIPSNNTMRSDTLANHVQDPNPNNPNNPNPNPAKRKRNLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKDQVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHAKICGTREYKCDCGTLFSRKDSFITHRAFCDTLAEESGRITSTIPAALTNFRTNHFTNAQPLKIPQIFPGFHSEFGGSGSEPLRLPPWLDQQVNNSQLHNHPLNFTTKPPSAANFSSSDAVDMFGSQQQETQWLNFRFPAETSFPGNSNNNNNNNLLLLPHGLKQEEQEENKGDHLSHSHSVQVSSLYLSNHQNQLQQQTHMGSMTARINDDDHTVVPSFNNIVEVQKLFKQADENSNLNRLVSLETSGNNNNNNDLGGGGGYLLNDHPLSMMGNKQELHSSSDNKNQLRDFLGVGVNSISRPFLLQQDFAEFNAMETATNQSQYNGHYC* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0817 495 Gene3D Classic Zinc Finger 124 203 - -
Lja3g0817 495 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 17 411 - -
Lja3g0817 495 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Lja3g0817 495 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Lja3g0817 495 MobiDBLite consensus disorder prediction 1 54 - -
Lja3g0817 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Lja3g0817 495 SMART c2h2final6 112 142 IPR013087 -
Lja3g0817 495 SMART c2h2final6 70 92 IPR013087 -
Lja3g0817 495 SMART c2h2final6 147 167 IPR013087 -
Lja3g0817 495 Gene3D Classic Zinc Finger 51 123 - -
Lja3g0817 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 411 - -
Lja3g0817 495 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0817 Lja-Chr3 8294267 8299164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0817 40 211 IDZ Gene Family AT3G45260 87.209 9.52e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0817 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0817 K25870 - gmx:100781896 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0817 3 8294267 8299164 Lja3g0817 3 8294267 8299164 ECH