Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0814 ATGGAAATTGATCTGAACCATGAAGTGATTGAGGTGGAGAAGAATGCATTGTGTGAAAGGGAATGTGGTTCTTGTGTTTGTTGTTTGTCCTCTTCAGCTTGTTCATCTAATTCTAGCTCATCTTCACCTGGTGTGTCTTCTTCTTATCTTGAGCTTTGGCATGCTTGTGCTGGCCCTCTTACCTCACTTCCTAAGAAAGGAAATGTGGTGGTGTATTTTCCACAAGGTCACTTAGAACAAGTAGCTTCTTTCTCTCCTTTTGCCCCATTGGAGATGCCCACCTATGATCTTCAGCCACAGATCTTTTGCAAGGTTGTCAATGTCCAGCTACTGGCCAACAAGGAGAATGATGAGGTTTATACTCAGGTTACTTTGCTTCCTCAAGCTGAGTGTGCAGGGAAGCATTTGGAGGGGAAAGAACTTGAGGAACTGGGAGCAGATGAGGAGGGAGATGGAGGGTCGCCTTCAAAATCAACCTCTCACATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGGTTTTCTGTTCCTCGTAGAGCTGCTGAGGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCGCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAACCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTTTTCCTAAGGGGTGAAAATGGAGAACTGAGATTGGGCATCAGAAGAGCTATTCGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAATCAGAACTGTTATCCCAATATCCTATCTTCTGTGGCAAATGCTATATCCACCAGAAGCATGTTCCGTGTTTTCTACAGTCCAAGAGCAAGTCACGCAGATTTTGTTGTTCCCTACCAAAAATATGTTAAAAGCATCATGAATCCAGTGACCACTGGGACAAGATTCAAAATGAGATATGAAGTGGATGAATCTCCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAACGAGTGATTTGGATCCCTATAGATGGCCTAATTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGAATATTGATGCTAATCATCAAGACCGGGTATCTCCATGGGATATCGATCCTTCTGGTCATCTGCCTCCCATGAACATTCAGTCTTCCCCAAGACTAAAGAAACTGCGGACCGGTTTGCAGGTTGCCTCACCCAGTCAACTCGTCACTGCAAGTGGCAGTGGAATGATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGATACATTAACCAACCGGCGAGGTTTTGAGATGAACTCTCCAAGTCATCAAAATCTTGCATCAGCCGGAGTAGGAAAGGTTACTTCGACTGAGCTCATGAGTGTTCACCCTTTCAGTTATGCAGCAGGCTTTATGGAAACTAACAGCTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCAATGAAATCCCTGACAGGAAAGGTTGATTTGAGCCTTGGTGCTTGGGGAAAACCTAATGGAAGTTGCACAACTTTCAACCTCCATCAGGCCACCAATCCCAGCTTTCCATCAGCATATTTTCCTTATGGGGATATTCACAATGTTGGTCATGCTAGCATGTTTGGCTCAAAACCCCCCACTTTCCAGAGAGAAAATGTCTCGTTTAACACGCCGTTCTCTCAGGCAGGGATCATTAGAAATGAAGTTGGACGATCAGATCTCCCAAATGAGCATAAACTGCAGGACAACATTTCTGTTTCTGCTTCATTAGGGGGTGCTGATATGAGGATTCTAGATGATAACAATGTCAAGGCAAATGTAAACTCCTGTAAACTATTCGGGTTTCCTTTGTCTGGGGAAACTAGTCCCCAAAATTTACAGAACCCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGATCTATCAAGATTGAGTAGCTACAATGATCTACTGAATGAACTAGAGAAACTATTTGGCATGGAAGGCCTTCTAAAAGATCCTGATAAGGGATGGAGGATCCTGTACACTGACAGTGAGAATGACATCATGGTTGTAGGGGATGACCCTTGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGACTAGTGATGATACTCATAGCTGTTTGGAGCAGGCACCAGTGGTTATGGAGGCTTCAAAGTCTTCCTCAGTGGGACAGCCAGATTATTCTCCAACTGTAGTTAGAGTCTAA 2385 0.4407 MEIDLNHEVIEVEKNALCERECGSCVCCLSSSACSSNSSSSSPGVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFAPLEMPTYDLQPQIFCKVVNVQLLANKENDEVYTQVTLLPQAECAGKHLEGKELEELGADEEGDGGSPSKSTSHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAIRPRNGLPESIVGNQNCYPNILSSVANAISTRSMFRVFYSPRASHADFVVPYQKYVKSIMNPVTTGTRFKMRYEVDESPERRCSSGMLIGTSDLDPYRWPNSKWRCLMVRWDENIDANHQDRVSPWDIDPSGHLPPMNIQSSPRLKKLRTGLQVASPSQLVTASGSGMMGFEESVRSPKVLQGQENAGFVSLYYGCDTLTNRRGFEMNSPSHQNLASAGVGKVTSTELMSVHPFSYAAGFMETNSFPRVLQGQEICPMKSLTGKVDLSLGAWGKPNGSCTTFNLHQATNPSFPSAYFPYGDIHNVGHASMFGSKPPTFQRENVSFNTPFSQAGIIRNEVGRSDLPNEHKLQDNISVSASLGGADMRILDDNNVKANVNSCKLFGFPLSGETSPQNLQNPAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLNELEKLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTQEEVEKMTIGMTSDDTHSCLEQAPVVMEASKSSSVGQPDYSPTVVRV* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0814 794 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 782 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g0814 794 SMART B3_2 163 265 IPR003340 GO:0003677
Lja3g0814 794 Gene3D - 327 398 - -
Lja3g0814 794 SUPERFAMILY DNA-binding pseudobarrel domain 155 273 IPR015300 -
Lja3g0814 794 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Lja3g0814 794 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Lja3g0814 794 SUPERFAMILY CAD & PB1 domains 669 745 - -
Lja3g0814 794 Gene3D - 662 755 - -
Lja3g0814 794 CDD B3_DNA 161 263 IPR003340 GO:0003677
Lja3g0814 794 Pfam Auxin response factor 289 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g0814 794 Gene3D - 160 265 IPR015300 -
Lja3g0814 794 ProSiteProfiles PB1 domain profile. 666 750 IPR000270 GO:0005515
Lja3g0814 794 PANTHER AUXIN RESPONSE FACTOR 12 782 - -
Lja3g0814 794 Pfam AUX/IAA family 663 750 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0814 Lja-Chr3 8245816 8252462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0814 45 794 B3 DNA Binding Superfamily AT5G60450 59.921 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g0814 AUX_IAA 3.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0814 - - gmx:100783513 1303.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0814 3 8245816 8252462 Lja3g0814 3 8245816 8252462 ECH