Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0811 ATGGATTCAGGACCGAGTATCAAGGATAAATTGACATATTTTCGTATAAAGGAGCTCAAAGACGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTCGATCGCATATTATCCATACTCTCAGATGAACAAGTTTCTAAAATGTGGGCTAAGAAGAATGCTGTGGGGAAAGAACATGTGGCAAAATTAGTGGATGACACATATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCATCAAAGGGACAGGGTGCATCAGATAGTAGTACTGTCAAGGTTAAAGGTGAAATTGATGATTCCTATCAATCAGCACCCAAGATTCGCTGTCTCTGTGGAAGAACATTAGAAACAGATGATTTGGTCAAGTGTGATGATTCAAGATGCCAAGTCTGGCAACACATCAGCTGTGTTATTATTCCAGAGAAACCGATGGAAGCCATCCCACCAGTCTCTGATAAATTTTTTTGTGAAATATGTCGACTCAGTCGTGCAGATCCGTTTTGGGTTTCAGTGGCACATCCCCTGTTTCCTGTGAAGTTGAACACAAGCAGTATTCCAACTGATGGAACCAACCCAGTGCAGAGCGTGGAGAAAACATTTCAACTTACAAGAGCAGACAAGGACTTGGTATCAAAACCAGAATTTGAAGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAGTGGCCACAGTATACAGACCTACAGGTTAATGGTGTCCCTGTTCGTGCAATTAACAGACCCGGCTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACACCATATACGAAAGACGGAGTGAATAAGATTTCCTTAACAGGATGTGATGCTCGCATCTTTTGTTTAGGGGTTCGCATTGTTAAAAGGCGCAGCGTCCAACAGATCCTTAACTTAATTCCAAAGGAGTCTGACGGTGAGCCTTTTGAAGATGCTCTTGCACGTGTTTGTCGTTGTGTTGGTGGTGGAAATGCTGCTGATAATGACGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATTAACCTTCGTTGTCCAATGAGTGGTTCAAGAATAAAGGTTGCTGGAAGATTCAAACCTTGTATACACATGGGTGGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCACGAAAATGGCAATGTCCTATATGTCTCAAAAACTATGCATTGGAGAATATCGTCATTGATCCATATTTCAATCGCATCACTACGATGATGAGAAATTGTGGTGAAGATGTTACAGAGATTGAGGTGAAGCCTGATGGTTCATGGCGTGTTAAGTCAAAGAGTGAAAGTGAGCGTCTTGGTTTAGGGAATCTTGTGCAATGGCACTCTCCCAATGGATCCCTCTGTGTTTCTACTGATGGAGATGTTAAAAAAGCAGAAGCATTGAAGTATGTCAAACAGGAAGCTGTTTCAGAGGGTCATACTGGTCTAAAAATTGGCATAAAAAAGAATCGCAATGGACTTTGGGAACTCAGCAAGCCTGAGGACACAAACACATCTTCTAGTCATAGATTAAAAGAGGTATTTGGAAATCCTGAACAGGTTGTTATTCCGATGAGCAGCAGTGCCACAGGAAGTGGATGGGACGGTGATGATCGTAGTGTAAACCAGGGTGGTGGTGGGCATATTGAATGTTCTACTGCAAATGGGACTGAGATGGATTCTCTCTGTCTCAATAATGTTGATTTAGCATACGGATATACTGCACCTAGCACTTCTGCTCAGGTGGGTGGTGCAGAAGTAATTGTTCTTAGTGATTCTGATGAAGATAATGATATATTAGTATCTTCGGCTATTGCATATAAGAACGACCAAAATGATAATGCAGATGGTTTCTCTATACCACCGCCTGGGATTGTTGATTCATATGCAGAAGATCAGAATCTTGGCGGAAATTCATGCTTGGGACTTTTTCCTAACGAAGATGATTTTGGGATGTCTTCCCTATGGTCATTGCCTTCTACATCTCAGGCTGGTCCAGGATTCCAATTATTTGGTTCTGATGGAGATGTGTCGGATGCATTGGTCCATTTGCCTGGTCCTGTTAACTGCACCTCATCACTGAACGGTTATGCATTGGCTCCTGATACTGCTATGGGATCCAGTAGTCTCTTACATGATACCCCTGCTGGTAGGTCGGATGCTGACTTAAATGGTGGCTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCATCGCTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCATCAGTGCAGAATGAATTAAGAGATCGGGCAGATGTGTCCAATGGTGTCTGCACTGAGGATTGGATATCTCTTAGTCTTGGAGGTGGTGCTGCTGGCAGTAATGGCAATGCTTCCGCTCAAAATGGATTGAATTCTAGAGGCAATGCTTCCATTCAAAATGGATTGAATTCTAGACATCAAGTCCCAGCCATGGATGATGACACACATACTTTGGCTGATACTGCTTCTTTGCTTCTTGGTATGAATGACGCTAGATCTGACAAAGCAAGTAGGCCAAGATCAGGTAGCCCTTTCTCATTTCCTCGCCAAAAACGCTCTGTTAGACCCCGCCTGTACCTATCAATTGATTCAGATTCGGAGTTGACTGTTGCTGTAACAAGATTAGATGCTGGAAGGGTATGA 2709 0.4312 MDSGPSIKDKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSKMWAKKNAVGKEHVAKLVDDTYRKMQISGATDLASKGQGASDSSTVKVKGEIDDSYQSAPKIRCLCGRTLETDDLVKCDDSRCQVWQHISCVIIPEKPMEAIPPVSDKFFCEICRLSRADPFWVSVAHPLFPVKLNTSSIPTDGTNPVQSVEKTFQLTRADKDLVSKPEFEVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGVNKISLTGCDARIFCLGVRIVKRRSVQQILNLIPKESDGEPFEDALARVCRCVGGGNAADNDDSDSDLEVVSDTFSINLRCPMSGSRIKVAGRFKPCIHMGGFDLEVFVEMNQRSRKWQCPICLKNYALENIVIDPYFNRITTMMRNCGEDVTEIEVKPDGSWRVKSKSESERLGLGNLVQWHSPNGSLCVSTDGDVKKAEALKYVKQEAVSEGHTGLKIGIKKNRNGLWELSKPEDTNTSSSHRLKEVFGNPEQVVIPMSSSATGSGWDGDDRSVNQGGGGHIECSTANGTEMDSLCLNNVDLAYGYTAPSTSAQVGGAEVIVLSDSDEDNDILVSSAIAYKNDQNDNADGFSIPPPGIVDSYAEDQNLGGNSCLGLFPNEDDFGMSSLWSLPSTSQAGPGFQLFGSDGDVSDALVHLPGPVNCTSSLNGYALAPDTAMGSSSLLHDTPAGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDRADVSNGVCTEDWISLSLGGGAAGSNGNASAQNGLNSRGNASIQNGLNSRHQVPAMDDDTHTLADTASLLLGMNDARSDKASRPRSGSPFSFPRQKRSVRPRLYLSIDSDSELTVAVTRLDAGRV* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0811 902 CDD PHD_Bye1p_SIZ1_like 114 165 - -
Lja3g0811 902 SMART PHD_3 114 166 IPR001965 -
Lja3g0811 902 SUPERFAMILY SAP domain 3 63 IPR036361 -
Lja3g0811 902 Gene3D SAP domain 2 61 IPR036361 -
Lja3g0811 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 171 IPR013083 -
Lja3g0811 902 Pfam PHD-finger 114 166 IPR019787 -
Lja3g0811 902 Pfam SAP domain 14 42 IPR003034 -
Lja3g0811 902 Pfam MIZ/SP-RING zinc finger 359 407 IPR004181 GO:0008270
Lja3g0811 902 ProSiteProfiles Zinc finger SP-RING-type profile. 346 429 IPR004181 GO:0008270
Lja3g0811 902 SMART sap_9 11 45 IPR003034 -
Lja3g0811 902 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 821 - -
Lja3g0811 902 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 447 IPR013083 -
Lja3g0811 902 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 821 - -
Lja3g0811 902 MobiDBLite consensus disorder prediction 801 822 - -
Lja3g0811 902 ProSitePatterns Zinc finger PHD-type signature. 115 165 IPR019786 -
Lja3g0811 902 SUPERFAMILY FYVE/PHD zinc finger 109 169 IPR011011 -
Lja3g0811 902 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0811 Lja-Chr3 8212154 8233674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g0811 PHD 4.1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0811 - - gmx:100793735 1442.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0811 3 8212154 8233674 Lja3g0811 3 8212154 8233674 ECH