Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g0801 | ATGGAAGGAGAAGCTTCCTTCAAGGAGAAGCTCATGGCCACAACGAAAGGGAAATCAACCACCACTGATTCGAATTCGCATATTGATCTTCTCAAGGAGAATCTCGTCACAATCGAGTACGAAAACGGTAACAGACTCTTACCCAAAATCATCATCAGCGATGAGTTCTACGAGAAGCTATGCGCACCCTGGAGAAAAACCCTGATTGTCAAATTACTAGGGAAGAAGAAGGGGAAGGAGAAGGAGATTGGTTATTTCTTGATGAAGGATAAACTCAAAGAAACTTGGAAAATCCGGGCTGGTTTTGAGATGATTGATGTTGGGTATGGATTCTACGCGATCACATTCGATGAAGATGATGATCGAGATAAGGTTATTGGAAATGGGCCATGGTTTATTTTCAATCAGCTTTTGACTGTAAGGTTATGGAGTCCTGAGTTTGTATCGTCGGAGAATGCGGTTGATAGAACCCTAATTTGGATTCGTTTTCCGGGTTTAAGTTTCGTTTTCCATGATGAGAGTGTTCTTTTTACTCTGGCTTCTTGTGCCGGTTGTCCTGTTAAAGTAGACCCTAATACTCTTAGGATAACTAATGGTCGATTTTCGGGTAGGGTTTGTGTTGCTAGGGTTTGTGTAGAGATAGACCTTAGTCTCCCATTGGTAGAGAATTTCTGTTTGCAGGATCATTGGTACAAAATTGAGTATGAAGGCATGGACCTATTATTGCCCTCGGTCGTTGTGCGGCCGGAAGAGCCCTGCGTTGAATTGAAGAGTTTCGAGAAGGTGGCGTCGGGCGAGGGTTGCTCCACCTCCGGCTCCGGCTCCGGCTCTGGCTCTAGGGATGATGGTTCGGTTTTTAGGGTTTATTTTAAGGGTTTGGTGAGTGAGGAGATTGTGAAGGGTCAGAAGGTGGTGTTTGGTGGGATTGGTGTTGCGGTTTGCGATGAGGATGATAATTTGTTGCTGAAGGTATCCAAGCCCCTCCTCCTTGGAATTGAAACCAGTAGGGTCATTGCAGAGGCTAAGGCTCTGATAGAAGCCTTAGATGCTGCCCACTCTTTGGAGCTGAAGCGTATCGTCTACTTTTGTGATTACTGCACTCTCTTACAATTTGTAAGTGGAAAATGGCCTGTGAAACACCAGAAGGTTGCTATGCTAGTTAATGAAGTGCATCTACTTCAAAGAGAATTTACATACTGCAATCCAAGGCTTGTGTCCAGAGATGATCTCAAGTATGCATCTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGCATGCAGAATCTGGCAGTAGTACAAAGAGTCTGAATCAAACTTGTGTCATTTGTTTGGAGGATTCTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAGCACCGGTATTGCTTTTCTTGCATGAAACGACATGTGGAAGTGAAGCTACTCCATGGAATGGTACCAAAATGCCCTCATGAGGGGTGTAATAATGAACTTCTAGCTGACAGTTGCCGGAAATTCTTGCCTCATAAACTAATTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCCGTTACCGATAAAATTTATTGTCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATCTTACTGGTTCTGAACCAGGACGCAAGAGATGTATAAAATGTCGCCGTTTTTTCTGTTTCATGTGCAAGGTCCCTTGGCATTTTGATATGTCATGTTATAGGTACAAAATGTTGAATCCTAACCCTCCAGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGTAGTTTTTGGCGGCAGTGTGTGAAATGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATAACTTGCAGATGCGGTAATGAATTTTGCTATCAGTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGATTGTCCACTTTGGGCCGATGACGATGAGAGTGAGTGGGAAGAAGATGAAGATGTTGATGATGATGATGATGATGATGATTCATACACTGATAGTCCTGATGATTTTTATTAA | 2058 | 0.4281 | MEGEASFKEKLMATTKGKSTTTDSNSHIDLLKENLVTIEYENGNRLLPKIIISDEFYEKLCAPWRKTLIVKLLGKKKGKEKEIGYFLMKDKLKETWKIRAGFEMIDVGYGFYAITFDEDDDRDKVIGNGPWFIFNQLLTVRLWSPEFVSSENAVDRTLIWIRFPGLSFVFHDESVLFTLASCAGCPVKVDPNTLRITNGRFSGRVCVARVCVEIDLSLPLVENFCLQDHWYKIEYEGMDLLLPSVVVRPEEPCVELKSFEKVASGEGCSTSGSGSGSGSRDDGSVFRVYFKGLVSEEIVKGQKVVFGGIGVAVCDEDDNLLLKVSKPLLLGIETSRVIAEAKALIEALDAAHSLELKRIVYFCDYCTLLQFVSGKWPVKHQKVAMLVNEVHLLQREFTYCNPRLVSRDDLKYASKLARDAIVSQSTRHAESGSSTKSLNQTCVICLEDSDINQFFSVDGCQHRYCFSCMKRHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGRKRCIKCRRFFCFMCKVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCDCPLWADDDESEWEEDEDVDDDDDDDDSYTDSPDDFY* | 686 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g0801 | 685 | ProSiteProfiles | Zinc finger RING-type profile. | 442 | 486 | IPR001841 | - | |
Lja3g0801 | 685 | Pfam | Domain of unknown function (DUF4283) | 59 | 202 | IPR025558 | - | |
Lja3g0801 | 685 | SUPERFAMILY | RING/U-box | 440 | 522 | - | - | |
Lja3g0801 | 685 | ProSiteProfiles | TRIAD supradomain profile. | 438 | 656 | IPR044066 | - | |
Lja3g0801 | 685 | SMART | ibrneu5 | 593 | 650 | IPR002867 | - | |
Lja3g0801 | 685 | SMART | ibrneu5 | 509 | 580 | IPR002867 | - | |
Lja3g0801 | 685 | Pfam | IBR domain, a half RING-finger domain | 594 | 648 | IPR002867 | - | |
Lja3g0801 | 685 | Pfam | IBR domain, a half RING-finger domain | 511 | 580 | IPR002867 | - | |
Lja3g0801 | 685 | Pfam | Reverse transcriptase-like | 307 | 420 | IPR002156 | GO:0003676|GO:0004523 | |
Lja3g0801 | 685 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 282 | 658 | - | - | |
Lja3g0801 | 685 | SUPERFAMILY | Ribonuclease H-like | 307 | 417 | IPR012337 | - | |
Lja3g0801 | 685 | MobiDBLite | consensus disorder prediction | 657 | 685 | - | - | |
Lja3g0801 | 685 | ProSitePatterns | Zinc finger RING-type signature. | 460 | 469 | IPR017907 | - | |
Lja3g0801 | 685 | SUPERFAMILY | RING/U-box | 523 | 584 | - | - | |
Lja3g0801 | 685 | Gene3D | - | 578 | 679 | - | - | |
Lja3g0801 | 685 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 282 | 658 | IPR031127 | GO:0004842|GO:0016567 | |
Lja3g0801 | 685 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 436 | 523 | IPR013083 | - | |
Lja3g0801 | 685 | Gene3D | - | 287 | 429 | IPR036397 | GO:0003676 | |
Lja3g0801 | 685 | SUPERFAMILY | RING/U-box | 594 | 655 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g0801 | Lja-Chr3 | 8117585 | 8121612 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g0801 | 280 | 639 | C3H Transcription Factor Family | AT2G19610 | 37.534 | 3.32e-69 | 230 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja3g0801 | - | - | ahf:112736554 | 567 |