Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0801 ATGGAAGGAGAAGCTTCCTTCAAGGAGAAGCTCATGGCCACAACGAAAGGGAAATCAACCACCACTGATTCGAATTCGCATATTGATCTTCTCAAGGAGAATCTCGTCACAATCGAGTACGAAAACGGTAACAGACTCTTACCCAAAATCATCATCAGCGATGAGTTCTACGAGAAGCTATGCGCACCCTGGAGAAAAACCCTGATTGTCAAATTACTAGGGAAGAAGAAGGGGAAGGAGAAGGAGATTGGTTATTTCTTGATGAAGGATAAACTCAAAGAAACTTGGAAAATCCGGGCTGGTTTTGAGATGATTGATGTTGGGTATGGATTCTACGCGATCACATTCGATGAAGATGATGATCGAGATAAGGTTATTGGAAATGGGCCATGGTTTATTTTCAATCAGCTTTTGACTGTAAGGTTATGGAGTCCTGAGTTTGTATCGTCGGAGAATGCGGTTGATAGAACCCTAATTTGGATTCGTTTTCCGGGTTTAAGTTTCGTTTTCCATGATGAGAGTGTTCTTTTTACTCTGGCTTCTTGTGCCGGTTGTCCTGTTAAAGTAGACCCTAATACTCTTAGGATAACTAATGGTCGATTTTCGGGTAGGGTTTGTGTTGCTAGGGTTTGTGTAGAGATAGACCTTAGTCTCCCATTGGTAGAGAATTTCTGTTTGCAGGATCATTGGTACAAAATTGAGTATGAAGGCATGGACCTATTATTGCCCTCGGTCGTTGTGCGGCCGGAAGAGCCCTGCGTTGAATTGAAGAGTTTCGAGAAGGTGGCGTCGGGCGAGGGTTGCTCCACCTCCGGCTCCGGCTCCGGCTCTGGCTCTAGGGATGATGGTTCGGTTTTTAGGGTTTATTTTAAGGGTTTGGTGAGTGAGGAGATTGTGAAGGGTCAGAAGGTGGTGTTTGGTGGGATTGGTGTTGCGGTTTGCGATGAGGATGATAATTTGTTGCTGAAGGTATCCAAGCCCCTCCTCCTTGGAATTGAAACCAGTAGGGTCATTGCAGAGGCTAAGGCTCTGATAGAAGCCTTAGATGCTGCCCACTCTTTGGAGCTGAAGCGTATCGTCTACTTTTGTGATTACTGCACTCTCTTACAATTTGTAAGTGGAAAATGGCCTGTGAAACACCAGAAGGTTGCTATGCTAGTTAATGAAGTGCATCTACTTCAAAGAGAATTTACATACTGCAATCCAAGGCTTGTGTCCAGAGATGATCTCAAGTATGCATCTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGCATGCAGAATCTGGCAGTAGTACAAAGAGTCTGAATCAAACTTGTGTCATTTGTTTGGAGGATTCTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAGCACCGGTATTGCTTTTCTTGCATGAAACGACATGTGGAAGTGAAGCTACTCCATGGAATGGTACCAAAATGCCCTCATGAGGGGTGTAATAATGAACTTCTAGCTGACAGTTGCCGGAAATTCTTGCCTCATAAACTAATTGAGACCATGCAGCAACGAAAATTGGAAGCTTCAATTCCCGTTACCGATAAAATTTATTGTCCTTATCCTAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATCTTACTGGTTCTGAACCAGGACGCAAGAGATGTATAAAATGTCGCCGTTTTTTCTGTTTCATGTGCAAGGTCCCTTGGCATTTTGATATGTCATGTTATAGGTACAAAATGTTGAATCCTAACCCTCCAGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGTAGTTTTTGGCGGCAGTGTGTGAAATGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATAACTTGCAGATGCGGTAATGAATTTTGCTATCAGTGTGGAGCTGAGTGGAAGGACAAAAAAGCAACATGTGATTGTCCACTTTGGGCCGATGACGATGAGAGTGAGTGGGAAGAAGATGAAGATGTTGATGATGATGATGATGATGATGATTCATACACTGATAGTCCTGATGATTTTTATTAA 2058 0.4281 MEGEASFKEKLMATTKGKSTTTDSNSHIDLLKENLVTIEYENGNRLLPKIIISDEFYEKLCAPWRKTLIVKLLGKKKGKEKEIGYFLMKDKLKETWKIRAGFEMIDVGYGFYAITFDEDDDRDKVIGNGPWFIFNQLLTVRLWSPEFVSSENAVDRTLIWIRFPGLSFVFHDESVLFTLASCAGCPVKVDPNTLRITNGRFSGRVCVARVCVEIDLSLPLVENFCLQDHWYKIEYEGMDLLLPSVVVRPEEPCVELKSFEKVASGEGCSTSGSGSGSGSRDDGSVFRVYFKGLVSEEIVKGQKVVFGGIGVAVCDEDDNLLLKVSKPLLLGIETSRVIAEAKALIEALDAAHSLELKRIVYFCDYCTLLQFVSGKWPVKHQKVAMLVNEVHLLQREFTYCNPRLVSRDDLKYASKLARDAIVSQSTRHAESGSSTKSLNQTCVICLEDSDINQFFSVDGCQHRYCFSCMKRHVEVKLLHGMVPKCPHEGCNNELLADSCRKFLPHKLIETMQQRKLEASIPVTDKIYCPYPRCSALMSKTEVLEYSKNLTGSEPGRKRCIKCRRFFCFMCKVPWHFDMSCYRYKMLNPNPPAEDLKLKSLATSSFWRQCVKCNHMIELAEGCYHITCRCGNEFCYQCGAEWKDKKATCDCPLWADDDESEWEEDEDVDDDDDDDDSYTDSPDDFY* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0801 685 ProSiteProfiles Zinc finger RING-type profile. 442 486 IPR001841 -
Lja3g0801 685 Pfam Domain of unknown function (DUF4283) 59 202 IPR025558 -
Lja3g0801 685 SUPERFAMILY RING/U-box 440 522 - -
Lja3g0801 685 ProSiteProfiles TRIAD supradomain profile. 438 656 IPR044066 -
Lja3g0801 685 SMART ibrneu5 593 650 IPR002867 -
Lja3g0801 685 SMART ibrneu5 509 580 IPR002867 -
Lja3g0801 685 Pfam IBR domain, a half RING-finger domain 594 648 IPR002867 -
Lja3g0801 685 Pfam IBR domain, a half RING-finger domain 511 580 IPR002867 -
Lja3g0801 685 Pfam Reverse transcriptase-like 307 420 IPR002156 GO:0003676|GO:0004523
Lja3g0801 685 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 282 658 - -
Lja3g0801 685 SUPERFAMILY Ribonuclease H-like 307 417 IPR012337 -
Lja3g0801 685 MobiDBLite consensus disorder prediction 657 685 - -
Lja3g0801 685 ProSitePatterns Zinc finger RING-type signature. 460 469 IPR017907 -
Lja3g0801 685 SUPERFAMILY RING/U-box 523 584 - -
Lja3g0801 685 Gene3D - 578 679 - -
Lja3g0801 685 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 282 658 IPR031127 GO:0004842|GO:0016567
Lja3g0801 685 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 523 IPR013083 -
Lja3g0801 685 Gene3D - 287 429 IPR036397 GO:0003676
Lja3g0801 685 SUPERFAMILY RING/U-box 594 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0801 Lja-Chr3 8117585 8121612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0801 280 639 C3H Transcription Factor Family AT2G19610 37.534 3.32e-69 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0801 - - ahf:112736554 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0801 3 8117585 8121612 Lja3g0801 3 8117585 8121612 ECH