Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0800 ATGGACATGGACGACATGGACGAAACCCAAGACTTGCAGTGGTTACTATCGGAGCACCGCCGTGAACTCGCCGCCGCGGAAGCCATGGAAACCGATCTCGACTTCGCATACCGTATCCAGTTACAAGAAGCCCTCGCCGCCTCCGTCGCCGCCCTCCCCTCTTCCTCCTCCTCCACCGCCATCATCCCGGAAGAGCCCGCCTTCGACGACGCCGTTCTCAACGCCACGTCATTACAGTTAGAGGAGCTAGCGAGGATGGAGCAGGAGATGAAGGACCGGGAGCAGAGCAAGGCGGAGATGCAGAACGCCAGGGAAGACCTCGTCCGTCGGATTCACGACCAGAAGATGGCGTCGGAGATTCTCGCGATCCCTGAGAGAGATTGGGAGGAGTGGGGTGACAATTACGAGAAGGCGTTCGGCGAGGGTTGCTCCTCCGGGGACCCTGGTGCGGTGTTTAGGGTTTATTTCAAGGGTTTGGTGAGTGAAGATTTTGTGAATGGTGAGAGTGAGAGAGTGGTTTTGGGTGGGATTGGTATTGCGATTTGTGATGAGGCTGATAATGTGTTGCTGGAAGTTTCTAAGCCCCTTCTTGGTACTGAAACCAGTAAGAAAATTGCAGAGGCTAAGGCTCTGATTGAAGCCTTCAATGCTGCCATTTTCTTGGACCTGAAGCGTGTTGTTTACTATTGTGATTACCCCCCTCTCTTGCAACATTTAAGTGGAAAGTGGCCTGTGAATCAGCAGAAGCTTGCTAGACTAGTTAATGAAGTGTATCTTCTTCAAAGAAAATTTACATACTGCAATCCAAGGCTTGTGGCGAGACATGATCTCAAGTATGCATTTAAGCTGGCAAGAGATGCAATTGTTTCTCAGTCCACAAGGTCTGCAGAAGCTGGCAGTAGTACAAAGAGTCTGAAAGAAACTTGTGTCATTTGTTTGGAGGATACTGATATCAATCAATTTTTTTCTGTTGATGGATGTCAACACCGGTATTGCTTTTCTTGTGTGAAACAACATGTGGAGGTGAAGCTGCTCCAGGGAATGGTGCCAAAATGCCCTCATGAGGGGTGCAAAAATGAGCTTCTAGCTGAAAGCTGCCGGAAATTCTTGCCTCATAAACTGATTGAGACCATGCAGCAACGAAAAGTAGAAGCTTCAATTCCCGTTACTGAGAAAATCTACTGTCCTTATCCAAGATGCTCTGCATTAATGTCAAAAACTGAGGTTTTAGAGTACTCCAAAAATGTTATTGGTGCTCAAAAGCAATGTATAAAATGTCGTGGTTTTTTCTGTTTCATCTGCAAGGTCCCTTGGCATAATGGTATGACATGTCATGCTTATAAAAAGTTGAATCCTAACCCTCCAGCTGAAGACCTGAAGCTGAAGTCTCTGGCAACAAGGAGTCTTTGGCGGCAGTGTGTGAAGTGTAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTATGAATTTTGCTATCAGTGCGGAGCTGGGTGGAAGGACAAAAAAGCAACATGTTCTTGTCCACTTTGGGCCGAGGAATATTTGGTTAGAGGGACATGA 1581 0.4738 MDMDDMDETQDLQWLLSEHRRELAAAEAMETDLDFAYRIQLQEALAASVAALPSSSSSTAIIPEEPAFDDAVLNATSLQLEELARMEQEMKDREQSKAEMQNAREDLVRRIHDQKMASEILAIPERDWEEWGDNYEKAFGEGCSSGDPGAVFRVYFKGLVSEDFVNGESERVVLGGIGIAICDEADNVLLEVSKPLLGTETSKKIAEAKALIEAFNAAIFLDLKRVVYYCDYPPLLQHLSGKWPVNQQKLARLVNEVYLLQRKFTYCNPRLVARHDLKYAFKLARDAIVSQSTRSAEAGSSTKSLKETCVICLEDTDINQFFSVDGCQHRYCFSCVKQHVEVKLLQGMVPKCPHEGCKNELLAESCRKFLPHKLIETMQQRKVEASIPVTEKIYCPYPRCSALMSKTEVLEYSKNVIGAQKQCIKCRGFFCFICKVPWHNGMTCHAYKKLNPNPPAEDLKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYQCGAGWKDKKATCSCPLWAEEYLVRGT* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0800 526 ProSitePatterns Zinc finger RING-type signature. 327 336 IPR017907 -
Lja3g0800 526 SUPERFAMILY RING/U-box 391 449 - -
Lja3g0800 526 Gene3D - 154 296 IPR036397 GO:0003676
Lja3g0800 526 ProSiteProfiles TRIAD supradomain profile. 305 518 IPR044066 -
Lja3g0800 526 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 35 522 - -
Lja3g0800 526 Pfam IBR domain, a half RING-finger domain 380 444 IPR002867 -
Lja3g0800 526 Pfam IBR domain, a half RING-finger domain 459 512 IPR002867 -
Lja3g0800 526 Pfam Zinc finger, C3HC4 type (RING finger) 309 353 IPR018957 GO:0046872
Lja3g0800 526 SMART ibrneu5 376 444 IPR002867 -
Lja3g0800 526 SMART ibrneu5 457 514 IPR002867 -
Lja3g0800 526 Gene3D - 442 523 - -
Lja3g0800 526 ProSiteProfiles Zinc finger RING-type profile. 309 353 IPR001841 -
Lja3g0800 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Lja3g0800 526 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 35 522 IPR031127 GO:0004842|GO:0016567
Lja3g0800 526 Pfam Reverse transcriptase-like 173 287 IPR002156 GO:0003676|GO:0004523
Lja3g0800 526 Coils Coil 523 526 - -
Lja3g0800 526 SUPERFAMILY RING/U-box 458 521 - -
Lja3g0800 526 SUPERFAMILY Ribonuclease H-like 175 276 IPR012337 -
Lja3g0800 526 SUPERFAMILY RING/U-box 307 389 - -
Lja3g0800 526 Coils Coil 73 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0800 Lja-Chr3 8110845 8114526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0800 151 503 C3H Transcription Factor Family AT2G19610 35.734 2.07e-68 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0800 - - aprc:113858620 749.969