Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0799 ATGGATAATAGCAATGGCAGTGACACACACAACAACCCCACTTCACTTTCTCACTCTCCTACTAATTCCTCATCTTCCTCACAACTACCCCAAGTTGTGATGAGCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGATAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGATCCTGCTAAGTTTACCATTGCCCACAGGGTCTTTGGTGCCAGCAACATCATCAAGCTCTTACAGGAGCTTCCAGAGTCTCAAAGAGTTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGCTGTGCAGGAGCAATTTGCCAACTACAAAAGCAGGTGAATGAGCTTCAAGCACAATTAGCCAAATCACAGGCTGAAATTGTAAACATGCAACTCCAGCAAGCCAATCTTGTGGCTCGAATTTGCATGGAAATGGCACCACCAAATCCACAGGAATCAGAATCACCTCAACAATCAGTGGGTGATTTTTTCATCTCAAGTCCTCCCCAAAGCATTGGCTATGGCATGAACTTCCTGGAGGAGAACACTAGCCTAAACACATTGTGGGAGCCACTTTGGACATGA 612 0.4542 MDNSNGSDTHNNPTSLSHSPTNSSSSSQLPQVVMSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKLLQELPESQRVDAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAEIVNMQLQQANLVARICMEMAPPNPQESESPQQSVGDFFISSPPQSIGYGMNFLEENTSLNTLWEPLWT* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0799 203 Pfam Lateral organ boundaries (LOB) domain 36 133 IPR004883 -
Lja3g0799 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 200 - -
Lja3g0799 203 Coils Coil 115 142 - -
Lja3g0799 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 19 200 - -
Lja3g0799 203 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Lja3g0799 203 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0799 Lja-Chr3 8099936 8102328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0799 32 203 AS2 family AT2G28500 65.385 9.17e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja3g0799 LOB 5.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0799 - - ccaj:109798760 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0799 3 8099936 8102328 Lja3g0799 3 8099936 8102328 ECH