Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0784 ATGTTAGATCTTAATCTCAATGCTTACTCAGCCGATTCGACTCAGAACGGCGACTCGCCGTCGCAGATGCTGTCGGAGGAGTTTCCAGAAGGTTCGTGGAATCAAATGGCGGAGTCAGGAACTTCGAATTCCTCCGTCGTCAATGCGGACGGGTCCAGCAACGAGGACTCGTGCTCCACGCGCCCCGATGACTCGTTCACCTTCCAATTCGACATCCTGAAGGTGGAAGGAGCAACCGACGTCGTGACGAGGGAGCTGTTCCCCGTGAGCGGAGGAGTGGACGGCGGGAACTGGCAGTTGCACGGTGCGGCGTCGTTTCAGCGCTCGGTGGATCTCTCGTTTGATCAAGTCCGAGGGAACAGCGAGATGGTGAAAATGGTCCAGCCTCATCAGCAAGTGAAGAAGAGTAGGAGGGGACCAAAGTCTCGTAGCTCGCAATATAGAGGGGTCACCTTTTACAGAAGAACTGGAAGATGGGAATCCCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACGGCTCATGCTGCTGCTAGAGCGTATGATCGAGCTGCGATTAAGTTCAGGGGAGTTGATGCTGACATTAATTTCAACCTGATTGATTATGAGGATGATCTTAAACAGACGGAGAATTTGTCCAAGGAAGAATTCATACACATACTCCGTCGCCAAAGTACTGGTTTCTCGAGGGGGAGTTCAAAATACCGTGGAGTAACACTCCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTGCTTGGCAAAAAGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGCAATGGAAGGGAAGCAGTGACTAACTTTGAGGCAAGTACATACGAACAAGGGAGGAAATCTGCAGCCATAAATGAATTTGGCAGTCAAAATCTTGACCTTAAATTGGGCATAGCAACCCCAGGACCTGCTCCAAAGGAAAATCGGGAGCAACTTCAGTTTTCCTCCATCCCTTACAACATGCATGCTGGAAGAAGTTCAAGGGTCGTAACTGAAGAGCGTCCTTCTGTATGGAATGGCATATGTCCTAGTTTCTTCCCCAATGAGGAAGGAGCAGAGGGTATTAGCATAGATCCTTCAAAAGGACTCCCCAATTGGGCGTGGCAAACGCATGGTCAGGTGAATACTGCCCCAGTCCCACCATTCTCGGCCGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCAACCACCATCTTTCAAACAAGATCCACAAACTCAATTCTGCCGAGTCCATGTTTTACTCCACCTCAATATTATTACCATGGTTAA 1350 0.4889 MLDLNLNAYSADSTQNGDSPSQMLSEEFPEGSWNQMAESGTSNSSVVNADGSSNEDSCSTRPDDSFTFQFDILKVEGATDVVTRELFPVSGGVDGGNWQLHGAASFQRSVDLSFDQVRGNSEMVKMVQPHQQVKKSRRGPKSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLIDYEDDLKQTENLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEASTYEQGRKSAAINEFGSQNLDLKLGIATPGPAPKENREQLQFSSIPYNMHAGRSSRVVTEERPSVWNGICPSFFPNEEGAEGISIDPSKGLPNWAWQTHGQVNTAPVPPFSAAASSGFSISATFPSTTIFQTRSTNSILPSPCFTPPQYYYHG* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0784 449 ProSiteProfiles AP2/ERF domain profile. 238 295 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 Pfam AP2 domain 146 194 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 Pfam AP2 domain 237 287 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 SUPERFAMILY DNA-binding domain 145 202 IPR016177 GO:0003677
Lja3g0784 449 ProSiteProfiles AP2/ERF domain profile. 146 202 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 PRINTS Ethylene responsive element binding protein signature 277 297 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 Gene3D AP2/ERF domain 237 296 IPR036955 GO:0003700|GO:0006355
Lja3g0784 449 Gene3D AP2/ERF domain 145 203 IPR036955 GO:0003700|GO:0006355
Lja3g0784 449 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 432 - -
Lja3g0784 449 SUPERFAMILY DNA-binding domain 237 296 IPR016177 GO:0003677
Lja3g0784 449 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 432 - -
Lja3g0784 449 CDD AP2 145 201 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 SMART rav1_2 238 301 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 SMART rav1_2 146 208 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 CDD AP2 237 297 IPR001471 GO:0003700|GO:0006355
Lja3g0784 449 MobiDBLite consensus disorder prediction 7 61 - -
Lja3g0784 449 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0784 Lja-Chr3 7960224 7964445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0784 45 321 AP2-EREBP Transcription Factor Family AT4G36920 61.189 7.93e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lja3g0784 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0784 K09284 - gmx:100788303 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0784 3 7960224 7964445 Lja3g0784 3 7960224 7964445 ECH