Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0781 ATGAATAATAATGGGAAAAGAGGTTCGGGAGAACAAAATCATACGCTTTTTGAAAAGAAGAGTCGAACTAATGGAGTAGTTAATGGAGGGCTAGGCTCTGGATCATCAACTGAAGATAACACAATACTTAATAAGGTGACTGCAGCTGGAAACAATGGCTTGAGAGGACGGATTCAAATCCAAGAGAGTTTGCAGGTTTCACAACCACCTCAAGGTCCAGCAGACACATGCTGGGGGAGATTTCTCCCTGTAAGATCGATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTACATGCTCTGTTGCGGAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCGTGGAAAATCCTAGTAGATCCAGAAAGTCACATTGACCTTGTCCTAACGGAGGTAGCTATGCCTGTTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAGCCACCAAAGTCTAAAGAATATCCCCGTGATCATGATGTCCTCTCATGATTCTATGGGTATAGTCTTTAATTGTTTGTCAAAGGGCGCAGTTGATTTTTTAGTGAAACCTGTTCGGAGAAATGAACTTAAAATCCTGTGGCAGCATGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGCGAATGAAAGTGGGACACAGCCCAGAAAATTTGCAAAGTCAAGAAGTGATGATGCATCTGAAAACAATAGTGATAGCAGTGATGACAATGACTATGGAAGCAGAGGTTTAAGTGTTCAAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGCTCAAGTTGGCAGTCCTCGTCCAGTTTCACCTCATAAACAACCGGTTGATGCCCCTGATAGTACATGTGCCCAAGTGACGCATACAAAACCTGAAAAAGAGAGCCATGAACTGATTGATCATCTTGATGACGTTGCAATGGGTAAAGACTTGGCTATGGGAATATCTTTGAATATGCAACAAAAGCATCCGCTTGAGGGTCTGTCAAGCAATCCAACCGGTAAAGGGATAAATAAGATGTCTGATATAGATGGTTTGCAGATGAATAAAGGACAAAGTAATGTCTGTAAAAAGGGACAACCAGAATACAACTGTGATCAAACCAGGGCGCAGGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAACAGCCCCCAGGGTGAAAGTAGAGATTTGAACACTCCAAATGGGTTTTCTGGTTTCTCACAAAGAAAAGCAAGTTCTTGTTTCCAACAACACCCATCCCTTGAACTGACTTTGAAAAGGCTAGGTGAAGTAAGAGATGTTAAAAGTGTATCAGGTGATGAATGCAATGTTTTGAGGCATTCAGATCTGTCAGCATTCTCAAAATATAACACTGCTTCTTCTGCTAATCAGGCTCAAACTGGAAATGGAGAAAGCTGTTCCCCACTAGACAACAGCTTTACACCGAATGCAGACACAATACACAACTTTCCATCTCATTTAAGGGGCACTCCTCCAAATCAACAGTTTAATGGGAGCAACAATAGCAATGACATAACCTCCATGAATACATATCTTGGCACCAAACCTGAAGAATTTGACAAGAAGCCAGAGTACACAATTGGGATTGGCTCGTTTAATTCTTCTGAACTCCAAACTGTGCAGAACAATGGTATCTCTTCATCTCAGAAGAAAACTTCTGCTGCCAGGGAAGAATATGCAGAAATGGCTAAAGGACAAGTGCGGGGCTCTGAACAAGGATTCCAAGTCGAGCACACTCGCCATCAGCATCACCATTATAATCACATTGCCCACCAAGCTGCTAAAGATCTTCGACCAGACCATGATCTCTCAGTGAAAAGCTCGACCAAAGCTGCTCAGCAATGTATATCATCAAATGTGCGTGGACCAGCAGAAACTAACGCTTTTGATGGAAATGCTAATGAGAGTGATCATGGGAGTAACGGACAGGAGGGAAGCAATACCTTGACAACCAAAACGATAAATTTGGAAAACAACCATGTGATAGCTGCAAGCTTTGAAGTTGAAGTTGGTGTCGTTGATAGGAAAAACACCATGAATGTGGCAGATGAAGAACGAACTGCGTTGAGGGAAGCTGCCTTGGCAAAATTTCGACTAAAGAGAAAAGAAAGATGCTTTGAGAATAAGGTTCGATATCACAGCAGAAAAAAACTGGCAGAGCAGCGGCCACGTATAAGGGGACAATTTGTACGACGAACTGTGTATGTCTGA 2259 0.4223 MNNNGKRGSGEQNHTLFEKKSRTNGVVNGGLGSGSSTEDNTILNKVTAAGNNGLRGRIQIQESLQVSQPPQGPADTCWGRFLPVRSIKVLLVEDDDSTRHVVHALLRNCSYEVTAVSNGLQAWKILVDPESHIDLVLTEVAMPVLSGIGLLCKIMSHQSLKNIPVIMMSSHDSMGIVFNCLSKGAVDFLVKPVRRNELKILWQHVWRRCHSSSGSANESGTQPRKFAKSRSDDASENNSDSSDDNDYGSRGLSVQDGSDNGSGTQSSWTKCLAQVGSPRPVSPHKQPVDAPDSTCAQVTHTKPEKESHELIDHLDDVAMGKDLAMGISLNMQQKHPLEGLSSNPTGKGINKMSDIDGLQMNKGQSNVCKKGQPEYNCDQTRAQENQAMNVVDVTDSNSPQGESRDLNTPNGFSGFSQRKASSCFQQHPSLELTLKRLGEVRDVKSVSGDECNVLRHSDLSAFSKYNTASSANQAQTGNGESCSPLDNSFTPNADTIHNFPSHLRGTPPNQQFNGSNNSNDITSMNTYLGTKPEEFDKKPEYTIGIGSFNSSELQTVQNNGISSSQKKTSAAREEYAEMAKGQVRGSEQGFQVEHTRHQHHHYNHIAHQAAKDLRPDHDLSVKSSTKAAQQCISSNVRGPAETNAFDGNANESDHGSNGQEGSNTLTTKTINLENNHVIAASFEVEVGVVDRKNTMNVADEERTALREAALAKFRLKRKERCFENKVRYHSRKKLAEQRPRIRGQFVRRTVYV* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0781 752 Pfam Response regulator receiver domain 89 199 IPR001789 GO:0000160
Lja3g0781 752 Pfam CCT motif 706 748 IPR010402 GO:0005515
Lja3g0781 752 ProSiteProfiles CCT domain profile. 706 748 IPR010402 GO:0005515
Lja3g0781 752 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR3 29 736 - -
Lja3g0781 752 MobiDBLite consensus disorder prediction 19 39 - -
Lja3g0781 752 Gene3D - 86 250 - -
Lja3g0781 752 MobiDBLite consensus disorder prediction 622 664 - -
Lja3g0781 752 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
Lja3g0781 752 CDD psREC_PRR 89 192 - -
Lja3g0781 752 SMART REC_2 87 202 IPR001789 GO:0000160
Lja3g0781 752 MobiDBLite consensus disorder prediction 241 273 - -
Lja3g0781 752 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 736 IPR045279 GO:0009736
Lja3g0781 752 SUPERFAMILY CheY-like 85 212 IPR011006 -
Lja3g0781 752 MobiDBLite consensus disorder prediction 612 664 - -
Lja3g0781 752 MobiDBLite consensus disorder prediction 336 369 - -
Lja3g0781 752 MobiDBLite consensus disorder prediction 1 39 - -
Lja3g0781 752 MobiDBLite consensus disorder prediction 211 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0781 Lja-Chr3 7918206 7925363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0781 78 482 Response Regulator Gene Family AT5G60100 48.077 1.76e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja3g0781 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0781 K12129 - gmx:100785796 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0781 3 7918206 7925363 Lja3g0781 3 7918206 7925363 ECH