Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0780 ATGAGTTGCTTTTGCTTTACAGCGAAAAAGTCGAGTGAAAAATCGGTCAGCGATGACTCTAGTAACACACAGAAGAAGCCTACCAATCTCACTGTTGCAGATAAGGTCAAGAGTGATGACAAAGTAATTGAGAAAAAAGAAGAGGGTTCTAAGGATGATCAACTTGCTCAGGATGTGAAGAATTTAAATTTAAAAGACAATGTTTCTGAGGACGGCAGCAATAAGGGTAACCGGGCACTGACATTCACTTTTAATGAACTTGAAGTTGCAACCGGAAATTTTAGGGCGGATTGCTTTTTGGGTGAAGGAGGCTTTGGCAAGGTTTACAAGGGACACTTGGAGAGAGTAGATCAGGTTGTAGCCATAAAGCAACTCGACCTCCATGGACTTCAAGGAATTCGGGAATTTGTCGTTGAGGTATTGACGTTGGGTTTGGCAGACCACCCTAATCTTGTCAAATTGATTGGATTTTGTGCTGAGGGAGTGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGGACCATTTGCTTGATCTTCCGCCTGGTGGAAAACCACTTGATTGGAATACCAGAATGCGAATAGCAGCCGGCGCAGCTCGAGGTTTGGAGTATCTGCATGATAAAATGAAGCCTCCTGTCATATACCGTGATCTGAAGTGCTCTAACATTTTGTTAGGTGAGGGATATCATGCCAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGCCCAATTGGTGATAAGACCCATGTTTCAACTAGGGTTATGGGCACATATGGGTACTGTGCCCCGGATTATGCAATGACGGGCCAGTTGACATTCAAGTCAGATATTTACAGCTTTGGGGTTGTTCTTTTGGAGCTCATCACAGGCAGGAAAGCTATTGACCATACAAAACCTGCCAAAGAACAGAATCTGGTTGCATGGGCAAAACCCTTGTTCAGAGATAGGCAAAAATTCTCGCAAATGGTTGACCCATTGCTTCAAGGTCAATATCCGAAGAGAGGCTTATACCAAGCTCTTGCTATCGCAGCAATGTGTGTTCAAGAGCAGCCTAGTATGCGGCCTGTTGTAGCTGATGTGGTTACAGCGCTAAATTACCTTGCTTCCAACAAGTATGATCCCTTAAATCAGCATGTACAAACCTCTAAAAACCCATCTCCTCCGAAAGATGGAAGGGATGATGATGACCATAGACATAGTTCTAGTAGTGAGCATAACGCAGAAGATCAACAATAA 1248 0.4359 MSCFCFTAKKSSEKSVSDDSSNTQKKPTNLTVADKVKSDDKVIEKKEEGSKDDQLAQDVKNLNLKDNVSEDGSNKGNRALTFTFNELEVATGNFRADCFLGEGGFGKVYKGHLERVDQVVAIKQLDLHGLQGIREFVVEVLTLGLADHPNLVKLIGFCAEGVQRLLVYEYMPLGSLEDHLLDLPPGGKPLDWNTRMRIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEGYHAKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKPAKEQNLVAWAKPLFRDRQKFSQMVDPLLQGQYPKRGLYQALAIAAMCVQEQPSMRPVVADVVTALNYLASNKYDPLNQHVQTSKNPSPPKDGRDDDDHRHSSSSEHNAEDQQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0780 415 MobiDBLite consensus disorder prediction 391 415 - -
Lja3g0780 415 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Lja3g0780 415 SUPERFAMILY Protein kinase-like (PK-like) 82 391 IPR011009 -
Lja3g0780 415 SMART serkin_6 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0780 415 Gene3D Phosphorylase Kinase; domain 1 54 170 - -
Lja3g0780 415 MobiDBLite consensus disorder prediction 378 415 - -
Lja3g0780 415 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 401 - -
Lja3g0780 415 ProSiteProfiles Protein kinase domain profile. 94 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0780 415 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g0780 415 CDD STKc_IRAK 100 369 - -
Lja3g0780 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Lja3g0780 415 Gene3D Transferase(Phosphotransferase) domain 1 171 389 - -
Lja3g0780 415 PANTHER OS07G0668900 PROTEIN 1 401 - -
Lja3g0780 415 Pfam Protein tyrosine and serine/threonine kinase 99 367 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0780 Lja-Chr3 7902909 7907297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0780 1 373 Glycoside Hydrolase AT3G07070 56.836 1.67e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja3g0780 PK_Tyr_Ser-Thr 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0780 - - gmx:100804000 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0780 3 7902909 7907297 Lja3g0780 3 7902909 7907297 ECH
Lja3g0780 3 7902909 7907297 Lja3g2839 3 43899949 43903635 ECH
Lja1g2114 1 24558386 24561403 Lja3g0780 3 7902909 7907297 ECH
Lja3g2839 3 43899949 43903635 Lja3g0780 3 7902909 7907297 PCT