Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0777 ATGGAGGCATTTCCAAGAGACCCTCGTGGCTCACTTGAAGTATTCAACCCTTCCTCTTCCCTCACCACCGAGAAGCCAACCAACTCGCCGTTACGCACCCAACACTCCTGGAAGGATTGGAAAGACCCAACACGCGCCGACGACCCTCCAAAGCCAATCGCCGGTTCAAATGCCGATGAAGTCGCGGTCGCAATCAGTGACCCTCCAACCTCCTGGATGGCAATCAGTGAAACTGCGTCACCTCCACCGGTGGTCAGAGAATCCGCGGCGGCGCAGAGGGCGGCGGAGTGGGGTTTAGTGCTGAAAACAGACGCGGAGACAGGGAAGCCGCAGGGAGTGGGGGTTCGGAGCTCCGGCGGGTCGAGAAGGGACTCGAAGACCTCCGTGAGAAGCTCCGGCGAGTCGTCAGATGACGGCGGCGGGGAGTACCGGGGAATACCGAGGGTGTCGGAGGATTTGAGGGATGCGTTGTCGGCGTTTCAACAGACATTCGTGGTGTCGGATGCTACCAAACCCGATTACCCGATATTGTATGCGAGTGCCGGGTTTTTTAAGATGACGGGTTATACTTCCAAAGAGGTCATAGGGAGGAACTGTCGGTTTATGCAGGGATTAGATACTGATCCAGAGGACGTGGCTAAGATAAGAGAAGCACTGCAAGGTGGAGAGAGTTATTGTGGAAGGTTACTAAACTACAAGAAGGATGGGACTCCCTTTTGGAACCTTCTCACTATTTCCCCGATCAAGGACGACAATGGCAATGTCCTTAAATTTATAGGAATGCAAGTGGAGGTTAGCAAGCACACTGAGGGGTCCAAGGAAAAGATGCTACGTCCCAATGGATTGCCTGAATCCTTGATTCGATATGATGCTCGTGAGAAAGAGAAAGCAAACTCCTCAGTCACCGAGCTGGTTCAAGCCGTACGTCGCCCAAGAGCACTCAGTGAATCAACAAACCGTCCCTTGTTCATCAAAAAGCCAACAACAACACGCGATGCTGATCAAGACAAACCAGACAAGAAGCCATCAAGGAGAAAATCTGAGAGTGTTGCTTCTTCCAGACGCAAATCACACTCCGGCGGAGACACAATGCAGCGAATCTCCGAGCTCCCCGAGAAGAAAAACAAGAACTCACGCCGTCGTTCTTTCATGGGGTTCGTCAGGAAAAGTATGTCCAATTTTGAAAGCTTCCATGATGAAGAAGTTGCTGATGAGGGCTCTGATTCTAGTGAGGATGATGGCAGGACTGATAGCTTTGATGACTACAAAGTACAAAAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACGCTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCGAGGCTACCTGACAACCCCATTATCTTTGCTTCTGATAGCTTCTTAGAGCTTACGGAATATAGCCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAGACTGATCCAGCAACTGTGAAAAAAATTAGACAGGCTATTGACAACCAAACAGATGTTACTGTGCAGCTTATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTATTTCATTTACAACCAATGCGTGATCAGAAGGGAGAGGTACAGTATTTTATTGGGGTTCAACTTGATGGTAGTCAACATGTGGAGCCTCTTCACAACTGCATTAAAGAAGATACAGCAAAGGAGGGAGAACATTTGGTAAAACAAACAGCAGAAAATGTTGATGATGCATTGAGAGAACTCCCAGATGCAAATTTGAAACCAGATGATTTATGGATGAATCATTCAAAACTGGTTCACCCCAAACCTCACAGGAAGGATGCTGATGCTTGGAGAGCTATTCAGAAGATCCTAGATAATGGAGAACAGATAGGCTTAAAGCATTTCAAACCAATTAAGCCTTTGGGATCAGGAGATACTGGCAGTGTCCATCTGGTGGAGCTATGTGAAACTGGTCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTGGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTAATAACTGATTACTATCCTGGAGAACTATTCATACTTCTTGACCGACAACCAGCAAAGGTTCTCAGGGAAGACTCAGTAAGATTTTATGCTGCTGAAGTAGTTGTTGCATTGGAGTACCTCCATTGTCAAGGGATCATATATCGGGATTTGAAGCCAGAAAATGTGTTACTCCAGAGCAGCGGACATGTCTCCCTAACAGATTTTGATTTATCATGTTTAACATCTTGCAAACCACAGCTTGTAATTCCAGCTACAAATGAAAAAAAGGGACAGCAGAAAGGCCAACAGGCTCCTGTATTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCACCGGAAATTATAACAGGTTCAGGCCATACTAGTGCAGTTGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTGTATGGTTACACTCCATTCAGGGGAAAAACTAGGCAAAGAACATTTGCAAATATTCTCCACAAGGATCTTAAATTTCCAAAAAGTAAACAGGTAAGTCTGAGTGGAAAACAGTTAATGTACCGGTTGTTGCAGAGAGACCCCAGTAGCAGATTGGGCTCAAAGGAAGGAGCAAATGAAATTAAGCGCCATCCCTTCTTCCGGGGTATCAACTGGGCCCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGCTCCTCTCTTTGGGACAACTGAAGAAGAAAAGAAAGCCAAATATGTAGATCCTGTGAAAGAGGATATGAGTGTCTTCTGA 2886 0.4595 MEAFPRDPRGSLEVFNPSSSLTTEKPTNSPLRTQHSWKDWKDPTRADDPPKPIAGSNADEVAVAISDPPTSWMAISETASPPPVVRESAAAQRAAEWGLVLKTDAETGKPQGVGVRSSGGSRRDSKTSVRSSGESSDDGGGEYRGIPRVSEDLRDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFMQGLDTDPEDVAKIREALQGGESYCGRLLNYKKDGTPFWNLLTISPIKDDNGNVLKFIGMQVEVSKHTEGSKEKMLRPNGLPESLIRYDAREKEKANSSVTELVQAVRRPRALSESTNRPLFIKKPTTTRDADQDKPDKKPSRRKSESVASSRRKSHSGGDTMQRISELPEKKNKNSRRRSFMGFVRKSMSNFESFHDEEVADEGSDSSEDDGRTDSFDDYKVQKREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIRQAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIKEDTAKEGEHLVKQTAENVDDALRELPDANLKPDDLWMNHSKLVHPKPHRKDADAWRAIQKILDNGEQIGLKHFKPIKPLGSGDTGSVHLVELCETGQYFAMKAMEKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGELFILLDRQPAKVLREDSVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLVIPATNEKKGQQKGQQAPVFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQRTFANILHKDLKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPELDAPLFGTTEEEKKAKYVDPVKEDMSVF* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0777 961 SUPERFAMILY Protein kinase-like (PK-like) 619 936 IPR011009 -
Lja3g0777 961 ProSiteProfiles Protein kinase domain profile. 632 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0777 961 Pfam Protein kinase domain 634 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0777 961 ProSiteProfiles PAC domain profile. 505 559 IPR000700 -
Lja3g0777 961 Gene3D PAS domain 420 584 - -
Lja3g0777 961 Gene3D Phosphorylase Kinase; domain 1 631 714 - -
Lja3g0777 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Lja3g0777 961 ProSitePatterns Protein kinases ATP-binding region signature. 638 661 IPR017441 GO:0005524
Lja3g0777 961 SMART pac_2 508 550 IPR001610 -
Lja3g0777 961 SMART pac_2 226 268 IPR001610 -
Lja3g0777 961 SMART pas_2 151 220 IPR000014 -
Lja3g0777 961 SMART pas_2 433 502 IPR000014 -
Lja3g0777 961 Pfam PAS domain 170 266 IPR000014 -
Lja3g0777 961 Pfam PAS domain 454 546 IPR000014 -
Lja3g0777 961 CDD PAS 446 546 IPR000014 -
Lja3g0777 961 MobiDBLite consensus disorder prediction 1 60 - -
Lja3g0777 961 SMART serkin_6 632 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g0777 961 TIGRFAM sensory_box: PAS domain S-box protein 176 270 IPR000014 -
Lja3g0777 961 TIGRFAM sensory_box: PAS domain S-box protein 456 546 IPR000014 -
Lja3g0777 961 CDD PAS 176 265 IPR000014 -
Lja3g0777 961 MobiDBLite consensus disorder prediction 327 379 - -
Lja3g0777 961 ProSiteProfiles PAS repeat profile. 149 220 IPR000014 -
Lja3g0777 961 MobiDBLite consensus disorder prediction 310 381 - -
Lja3g0777 961 CDD STKc_phototropin_like 630 937 - -
Lja3g0777 961 Gene3D Transferase(Phosphotransferase) domain 1 715 930 - -
Lja3g0777 961 Gene3D PAS domain 163 319 - -
Lja3g0777 961 ProSiteProfiles PAS repeat profile. 431 504 IPR000014 -
Lja3g0777 961 SUPERFAMILY PYP-like sensor domain (PAS domain) 170 262 IPR035965 -
Lja3g0777 961 PANTHER FLIPPASE KINASE 1-RELATED 98 958 - -
Lja3g0777 961 MobiDBLite consensus disorder prediction 397 423 - -
Lja3g0777 961 SUPERFAMILY PYP-like sensor domain (PAS domain) 447 546 IPR035965 -
Lja3g0777 961 MobiDBLite consensus disorder prediction 101 146 - -
Lja3g0777 961 ProSiteProfiles PAC domain profile. 223 277 IPR000700 -
Lja3g0777 961 MobiDBLite consensus disorder prediction 13 34 - -
Lja3g0777 961 PANTHER PHOTOTROPIN-1 98 958 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0777 Lja-Chr3 7882222 7895401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0777 3 958 AGC Kinase Gene Family AT3G45780 69.587 0.0 1338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g0777 Pkinase 1.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0777 K20715 - gmx:100804524 1538.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0777 3 7882222 7895401 Lja3g0777 3 7882222 7895401 ECH
Lja3g2836 3 43606889 43630423 Lja3g0777 3 7882222 7895401 PCT