Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0774 ATGTATACACGCGCCACCGATTCCCTCACCCACTTCCCGCCATCGCCAACTCACAACTACCAACTTACCCTCAGCGAGCTGGACTCGCTCTCGCAACTCAACTCGGAGGTGAGTTCCAATGCCAATTACAGTGGCAGCAGCGGGAGCACCAGTTACGTGGGGTCGCCGAGCTCGCTGGCAAGTCACGAGACTCAGCGAGTTGGCTTGATGCAGAGGAGCGTTAGCAGCCACTCGCTGCAGAAGAATAGTGGAGTCCACCACCCCTTCTCTGCTCTGTTCGCTGAGTTGATGGACTCGAAGAACGGTCCGGTGCGGAGAGTTTACAGTACCGGTGATCTGCAGAGTGCTAGAGGAATGTCACATTATCATCACTCAGATAGTCCTTTGTCAACTGAGAGTAGTATGATAATAGAAGAAATGACCAGGGCTGCCAGTCCTTATAGCCCAGAGGAGAAGAAGTTGAGGATTGAGCGGTATAGAAGCAAGAGAAACCAGAGGAACTTCACCAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCTGACAGCCGGCCACGTGTTAGAGGACGATTTGTGAGGAATGATGAAATTGTGATGGACACTTCAGTAACAACCGGAGAGGAATTAGAAGATGATGAAGATGAGAATTGGACCAATTTCTTTGATTCCTTGGTTCCTGAAAATCATGCTCATGATCCTCAAAGTAGCTCCTCCTTTGATATGTTCTACTAA 732 0.4904 MYTRATDSLTHFPPSPTHNYQLTLSELDSLSQLNSEVSSNANYSGSSGSTSYVGSPSSLASHETQRVGLMQRSVSSHSLQKNSGVHHPFSALFAELMDSKNGPVRRVYSTGDLQSARGMSHYHHSDSPLSTESSMIIEEMTRAASPYSPEEKKLRIERYRSKRNQRNFTKKIKYACRKTLADSRPRVRGRFVRNDEIVMDTSVTTGEELEDDEDENWTNFFDSLVPENHAHDPQSSSSFDMFY* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0774 243 ProSiteProfiles CCT domain profile. 152 194 IPR010402 GO:0005515
Lja3g0774 243 Pfam CCT motif 154 194 IPR010402 GO:0005515
Lja3g0774 243 PANTHER CCT MOTIF PROTEIN 14 243 - -
Lja3g0774 243 MobiDBLite consensus disorder prediction 37 75 - -
Lja3g0774 243 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 14 243 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0774 Lja-Chr3 7835970 7840273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0774 118 193 Response Regulator Gene Family AT5G61380 37.895 1.81e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja3g0774 CCT 2.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0774 - - lang:109352757 273.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0774 3 7835970 7840273 Lja3g0774 3 7835970 7840273 ECH
Lja3g2830 3 43444327 43447234 Lja3g0774 3 7835970 7840273 PCT