Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0752 ATGGCACCAAAAGCTGATAGTTCTAAGAAGAATGATCCCAAGGCACAGGCCTTGAAGGCTGCGAAAGCAGTCAAGTCTGGCACTACCATTAAGAAGAAGACCAAGAAGATCAGGACAACTGTCACATTCCACAGGCCCAAGACATTGACAAAGACCAGGAACCCCAAATACCCTCGCATCAGTGCCACGCCCAGGAATAAGCTTGACCACTATCAGATTCTGAAGTTCCCTCTCACCACCGAGTCGGCCATGAAGAAAATCGAAGACAACAACACTTTGGTTTTCATTGTTGACCTTCGTGCTGACAAGAAGAAGATCAAGGCTGCCGTGAAGAAAATGTATGACATCCAGGCTAAGAAGGTTAACACATTGATCAGGCCTGATGGCACCAAGAAGGCATATGTTAGGTTGACTCCTGATTATGATGCATTGGATGTTGCAAACAAGATTGGGATTATCTAA 462 0.4545 MAPKADSSKKNDPKAQALKAAKAVKSGTTIKKKTKKIRTTVTFHRPKTLTKTRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKAAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0752 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lja3g0752 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 -
Lja3g0752 153 Gene3D - 34 153 IPR012677 -
Lja3g0752 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lja3g0752 153 MobiDBLite consensus disorder prediction 1 31 - -
Lja3g0752 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lja3g0752 153 TIGRFAM uL23_arch: ribosomal protein uL23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Lja3g0752 153 MobiDBLite consensus disorder prediction 1 16 - -
Lja3g0752 153 Pfam Ribosomal protein L23, N-terminal domain 14 62 IPR005633 -
Lja3g0752 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lja3g0752 153 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0752 Lja-Chr3 7619620 7621454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0752 36 153 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 92.373 1.69e-68 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0752 K02893 - gmx:100785534 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0752 3 7619620 7621454 Lja3g0752 3 7619620 7621454 ECH
Lja3g0752 3 7619620 7621454 Lja3g2810 3 42534981 42537033 ECH
Lja3g2810 3 42534981 42537033 Lja3g0752 3 7619620 7621454 PCT