Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0748 ATGCCGATTTCTAAAATTGCCATTGGAAATCCTTCTGAATTTGGCAAAGCTGATGCACTCAAGGCTGCTCTAGCTGAGTTCATCTCAATGCTTATCTTTGTCTTTGCAGGACAAGGCTCTGGCATGGCATATAACAAGCTCACAGACAATGGTTCAGCAACACCAGCTGGAGTAGTAGCTGCATCACTGTCCCATGCATTTGCTCTCTTTGTTGCTGTCTCTGTTGGTGCTAACATCTCTGGTGGCCATGTCAACCCTGCTGTTACATTTGGTGCCTTCATTGGTGGCCACATTACCCTCATTAGAGGCCTCTTGTATTGGATTGCTCAGTTGCTTGGCTCTGTGGTTGCTTGCTTGCTCCTCAAATTTGCCACTGGGGGATTGGAAACTTCTGCATTCTCATTGTCTTCTGGTGTGGGAGCATCAAATGCACTTGTCTTTGAGATTGTGATGACTTTTGGTTTGGTTTACACTGTGTATGCCACTGCAGTGGATCCAAAGAAGGGTGACATCGGGATTATTGCTCCAATTGCCATTGGTTTCATTGTGGGAGCTAACATCTTGGCAGGTGGTGCCTTTGATGGTGCATCCATGAACCCAGCAGTGTCTTTTGGGCCCGCAGTTGTTAGCTGGACCTGGACTAATCACTGGGTCTATTGGGCTGGCCCGTTGATTGGTTCAGCTATTGCAGCAGTTGTCTATGAGTTGTTCTTCATCCCCCAAAGCAATTATGAAGAGCTCCCTGTTGCAGAATATTAG 759 0.469 MPISKIAIGNPSEFGKADALKAALAEFISMLIFVFAGQGSGMAYNKLTDNGSATPAGVVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLIRGLLYWIAQLLGSVVACLLLKFATGGLETSAFSLSSGVGASNALVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWAGPLIGSAIAAVVYELFFIPQSNYEELPVAEY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0748 252 SUPERFAMILY Aquaporin-like 18 244 IPR023271 -
Lja3g0748 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Lja3g0748 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lja3g0748 252 CDD MIP 26 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Lja3g0748 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Lja3g0748 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g0748 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0748 Lja-Chr3 7594105 7595363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0748 1 252 Major Intrinsic Protein MIP AT4G01470 78.571 5.83e-141 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0748 K09873 - gmx:100777419 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0748 3 7594105 7595363 Lja3g0748 3 7594105 7595363 ECH