Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0746 ATGACACCCCAAGAAGAGCGTCTAGTCACGGAGCTTCACTCCAAATGGGGAAATAGATGGTCTAGAATTGCTCGCAAATTACCGGGGCGCACTGATAATGAGATCAAGAACTATTGGAGGACTCACATGAGGAAAAAGAAGGCTCAGGAGAAGGAGAAGAAGCGTGCAGCAGAAGCTGCATCATCATCATCACCTGCTGATTCTTCAAGCTGTGAATCCTCACTGACCTCAAATAATCATGGTGTGGATTCACATGCTTCCAAAGAGGCTGGAGAAGAAGACAGCTTTTATGACACAGGTGGAGCTCATAACATGAATAATGTTCATGTAATTGGAGAAGATCACCAAGATGGTGGTGATGATCAGGGGTACTCTATGGATGATATATGGAAAGATATTGCTATGTCAGAAGATGAGAATTTTAATCTGCAACCAGTCTTCGATGGGTATAGTGAAGAAGGTTGCAATTTCTCTTATCCTCCATTGTTTTCTCCATCATGGGATTATTCTTCAGACCCCCTTTGGGTGATGGATGACGAAGAAAGAAAGATGTTGTTTCCTCTGAGTCATGATCACCAATCTTTATCCTTCTATGGTGACCAAGGAAGAACATTTCTAACAGGCTAA 627 0.4258 MTPQEERLVTELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKKAQEKEKKRAAEAASSSSPADSSSCESSLTSNNHGVDSHASKEAGEEDSFYDTGGAHNMNNVHVIGEDHQDGGDDQGYSMDDIWKDIAMSEDENFNLQPVFDGYSEEGCNFSYPPLFSPSWDYSSDPLWVMDDEERKMLFPLSHDHQSLSFYGDQGRTFLTG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0746 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Lja3g0746 208 MobiDBLite consensus disorder prediction 61 84 - -
Lja3g0746 208 SMART sant 1 45 IPR001005 -
Lja3g0746 208 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 189 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lja3g0746 208 MobiDBLite consensus disorder prediction 26 102 - -
Lja3g0746 208 CDD SANT 1 43 IPR001005 -
Lja3g0746 208 Gene3D - 2 70 - -
Lja3g0746 208 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Lja3g0746 208 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Lja3g0746 208 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 189 - -
Lja3g0746 208 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0746 Lja-Chr3 7587719 7589423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0746 1 197 MYB Transcription Factor Family AT3G46130 49.239 3.53e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g0746 Myb_DNA-binding 4.4e-13 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0746 3 7587719 7589423 Lja3g0746 3 7587719 7589423 ECH
Lja3g0746 3 7587719 7589423 Lja3g2807 3 42503979 42506546 PCT