LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g0742	ATGTACTCGAGGAGAATACAGTGCCGAGATGGGAGATGGGGCTTGTTGTTGCAGCCATCTAAAAACTTGTCTAGGCCAAAATTCTCTGATCATCCATTCTTTCATTCCTTGTTGGTACATGCTTACAGTTCTGAAAGTGGTGGAAGAAGTGCAAGTAATGAAAATACATCTCAGGAAGATGCACATGCACGGTTTGGAGAACAGGATCTCAAAAATAACAAGCTTTCCAAAGAAAGTAAAAAGAGAGAATCACCGATTTTGACAAGAAGAGATAAGTTTAAAATTGAGATTTTGAGAAGAATTGTTCCGTGGGACAAAATTAACGTTTCTTGGGACACATTTCCATATCCCATTCATGAGGAAAAAAAAACTCTTCTGGTGGAATTTGCTGCTTCACATTTGAGACATAGTAAGATTGCTTCATCTTTTGGTACTCGCCTTGCATCTTCAAGTGGAAGAATACTGCTCCAGACTAGCACTGAGCTCTATCAGGAGAGATTAGTTAAAGCACTTGCACAAGGTTTACAAGTTCCTGTGTTGGTATTTAATAGCACCATCCTTGCTCCTTATGATCTTGATGATGACTCTGGGAAGGAAGGTTCTCTGGAGTCAGAGAATAAGGATCATGGTGATTCTAGTAAAAAAGAAGAGTGCACTAGCAGTTCCGGTTCAGAGTCGGATGCTAGTGATGATGATTATAGTGGTGAAGAAGAGTGTACTACCAGTACCGATGCAGAGTCAGATGCTAGTGATAATGAAGATACACAGGAATCTGCTGATGCAGCCCAGGAACATGTCCCACATAATGTTGGAGAATTGCCCAAGATAACGTCTGCAACAGATGGTTTGATTTCTGAGCCTTCCAAGTCTAATGATGACAAGTCTGATGATAAAATTGGATGTCAACTAAGAAAAGGCGACCGTGTGAAGTACACAGGGCCAACTATTCCAGCTACAGCTGATGATAGGCCTTTAGCTAATGGTAAGAGAGGAGAAGTATATGAGGTTAATGGAGATCGAGTCTCTGTCATTTTCGATATTAATGAGGTTGAGGTGGAAAGTGTTAATCATGATCTTGATGCTCAATCACAAGATTGCTACATAGCAATGGAGGCTTTATGTGAGGTTTTGCATTCCAAACAACCTCTTATTGTCTATTTTCCAGACAGTTTACATAAATCAGTTCCTGAGTCAATGCGAAGTGAGTTTATTCACAAGGTGCAAAAGATGTTTGACCAGTTATCTGGCCCCGTAGTTTTGATTTGCGGGCAATTTGATGCTCAGTCGAATGGACAATTCCTTTTTTCTACAAATGAAGGGCAAAAGACATCAAAAGATGGTGAAACTAACAAGGCCTTTAATGTGTTGTCTATACAGACACCTAAGGATGAGAATCTACTGGCAGCATTCAAAAAACAACTTGAGGAAGACAGGAAAAGTGTGATTTCACGTAGTAATTTGAATCAACTACGGAAAGTTCTCAACGAAAATCAGCTGTCATGCGCAGACCTCTTGCATGTAGATATTCATGGTGTCAATTTGACTAATAAGCAAGAAGCTGAAAAAGTAGTGGACTGGGCAAAAAATCATTACTTGTCCTCATGCCTGCTTCCTTGTGTTAAAGAAAATAGATTGTGTCTTCCTCAGGAAAGTCTTGAAATCGCAATCTCAAGGTTGAAGGGCGTGGAAACAATGTCAAGGAAACCTTCTGAGAGCCTCAAGTACCTTCCAGAGAATAAGCATGAGAGTAAAATCATTTCAGCTGTAGTACCTCCGGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAACATGTGAAGAAGGCACTTGATGAACTTATTATTCTTCCAATGAGAAGGCCTGAACTTTTCACTCATGGAAACCTGTTGCGGCCCTGCAAAGGATTATTACTGTTTGGTCCTCCTGGAACTGGGAAAACCCTTACGGCCAAGGCACTTGCTAGTGAAGCTGGTGCAAATTTTATCAACGTAACTAATTCGACCCTTACATCAAAGTGGTATGGAGAAGAGGAAAAATTAACCAAAGCACTTTTCTCATTAGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAATTGACAGTTTGCTTGGTGCTCGAGGTCGTGCTTCTGAGCATGAGGCCACTAGAAAATTGAGGAACGAGTTCATGGCTGAGTGGGATGGACTAAGGTCAAAAGAAAACCAAAGAATACTCATCATTGGTGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGCCGCTTACCAAGAAGGATATATGTGGATTTACCAGACGCAGAAAATCGAATGAAGATTTTAAGAATAATTCTTAAACATGAAAATTTGGATCCTGATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTGTTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTAGAGGAAGAAAAGATGGGAGGCAATAAAGGTACAACTTCTGCATTAAGGCCTCTTACTTTGGATGATTTAATTCAATCGAAATCCAAGGTGCGTCCATCAGTTGCCGGTGATTCAGTAAGCGCGAAGGAGTTGAGCAAGTGGAACGAAATGTATGGTGAGGGTGGTACGTACTAG	2649	0.4085	MYSRRIQCRDGRWGLLLQPSKNLSRPKFSDHPFFHSLLVHAYSSESGGRSASNENTSQEDAHARFGEQDLKNNKLSKESKKRESPILTRRDKFKIEILRRIVPWDKINVSWDTFPYPIHEEKKTLLVEFAASHLRHSKIASSFGTRLASSSGRILLQTSTELYQERLVKALAQGLQVPVLVFNSTILAPYDLDDDSGKEGSLESENKDHGDSSKKEECTSSSGSESDASDDDYSGEEECTTSTDAESDASDNEDTQESADAAQEHVPHNVGELPKITSATDGLISEPSKSNDDKSDDKIGCQLRKGDRVKYTGPTIPATADDRPLANGKRGEVYEVNGDRVSVIFDINEVEVESVNHDLDAQSQDCYIAMEALCEVLHSKQPLIVYFPDSLHKSVPESMRSEFIHKVQKMFDQLSGPVVLICGQFDAQSNGQFLFSTNEGQKTSKDGETNKAFNVLSIQTPKDENLLAAFKKQLEEDRKSVISRSNLNQLRKVLNENQLSCADLLHVDIHGVNLTNKQEAEKVVDWAKNHYLSSCLLPCVKENRLCLPQESLEIAISRLKGVETMSRKPSESLKYLPENKHESKIISAVVPPGEIGVKFDDIGALEHVKKALDELIILPMRRPELFTHGNLLRPCKGLLLFGPPGTGKTLTAKALASEAGANFINVTNSTLTSKWYGEEEKLTKALFSLASKLAPVIIFVDEIDSLLGARGRASEHEATRKLRNEFMAEWDGLRSKENQRILIIGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIILKHENLDPDFQFDKLANLTDGYSGSDLKNLCVAAAYRPVQELLEEEKMGGNKGTTSALRPLTLDDLIQSKSKVRPSVAGDSVSAKELSKWNEMYGEGGTY*	883

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	229	257	-	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	45	59	-	-
	Lja3g0742	882	Gene3D	-	770	853	-	-
	Lja3g0742	882	CDD	AAA	603	769	-	-
	Lja3g0742	882	Pfam	AAA+ lid domain	791	827	IPR041569	-
	Lja3g0742	882	Pfam	ATPase family associated with various cellular activities (AAA)	638	768	IPR003959	GO:0005524\|GO:0016887
	Lja3g0742	882	ProSitePatterns	AAA-protein family signature.	741	760	IPR003960	GO:0005524\|GO:0016887
	Lja3g0742	882	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	596	818	IPR027417	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	192	221	-	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	192	324	-	-
	Lja3g0742	882	SMART	AAA_5	634	771	IPR003593	-
	Lja3g0742	882	PANTHER	-	50	880	-	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	60	83	-	-
	Lja3g0742	882	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	50	880	-	-
	Lja3g0742	882	Gene3D	-	596	864	IPR027417	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	287	305	-	-
	Lja3g0742	882	MobiDBLite	consensus disorder prediction	45	83	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g0742	Lja-Chr3	7536017	7552468	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g0742	632	833	Calmodulin-binding Proteins	AT3G56690	34.951	2.69e-30	127

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g0742	-		-	gmx:100812718	1127.46