Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0741 ATGAAGAGAATGAGAGACATGGAGGGTGACATGGCTAATTGTTTGATGTTACTATCCAAAGTTGGTGAGAGCTGCAACAATGGTGATGGTTTCGTGTGCAAGACGTGTAACAGGGAGTTCCTTTCGTTTCAAGCCCTCGGAGGACACAGAGCGAGCCACAAAAGGCTAAAGCTCATGGCTGCAGGCCTTTCTTCTTTCTCCTCGCGCCCGTTACAAGGCTTGAGGGAGAAGAAACAAAAGATGCACTCATGTCCCATTTGCGGGATTGAGTTTGCAATTGGTCAAGCACTTGGAGGGCACATGAGAAAGCACAGAGCTGCTATGAATGATGGTGGTGCTAAAAGGTCTGATCATTTGTGCTTGGACTTGAACTTGACACCCTATGAGAATGATCTCAACCTTATCTTGAGGACACCACCTTTATCAAAAAAAATCTAG 438 0.4589 MKRMRDMEGDMANCLMLLSKVGESCNNGDGFVCKTCNREFLSFQALGGHRASHKRLKLMAAGLSSFSSRPLQGLREKKQKMHSCPICGIEFAIGQALGGHMRKHRAAMNDGGAKRSDHLCLDLNLTPYENDLNLILRTPPLSKKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0741 145 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lja3g0741 145 Pfam C2H2-type zinc finger 82 106 - -
Lja3g0741 145 Pfam C2H2-type zinc finger 31 55 - -
Lja3g0741 145 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Lja3g0741 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Lja3g0741 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lja3g0741 145 PANTHER ZINC FINGER PROTEIN ZAT5 8 136 - -
Lja3g0741 145 Gene3D Classic Zinc Finger 29 104 - -
Lja3g0741 145 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 8 136 - -
Lja3g0741 145 SUPERFAMILY beta-beta-alpha zinc fingers 31 104 IPR036236 -
Lja3g0741 145 SMART c2h2final6 82 104 IPR013087 -
Lja3g0741 145 SMART c2h2final6 31 53 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0741 Lja-Chr3 7521532 7522481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0741 1 136 C2H2 Transcription Factor Family AT2G28710 50.633 4.96e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0741 zf-C2H2_6 2.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0741 - - gmx:112998408 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0741 3 7521532 7522481 Lja3g0741 3 7521532 7522481 ECH
Lja3g0741 3 7521532 7522481 Lja3g2803 3 42395722 42396495 ECH
Lja3g2803 3 42395722 42396495 Lja3g0741 3 7521532 7522481 PCT