Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0737 ATGTCTGCAGGTCTCGATATGACCCTCGACGACCTCATCAAAACCAACAAAAAATCCGGATCCGGAAACTTCAGGGGCCGCTCCGGACCCGGACCCGCTCGCCGCATCCCCAACCGCTCCGGCAACCGCACCGCGCCATACGCCGCCACCGCTAAGGCGCCGGAGACCGCGTGGCAGCACGATTTGTATGGAGATCAGGCTTTGCCGCCGTACCCTGTGGCTCACGATGCTCGTGCACCGCCTTCCTTAGAAACTGGGACCAAGCTCCTCATATCTAATTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTGGTGAAGTTGGTGACTTGAAACGACATGGCGTTGATTATGACAGGAGTGGCAGATCAAAGGGTTCTGCAGTAGTAGTCTTCTCACGACGAGCTGATGCTATAGCTGCTGTGAAGAGGTACAACAATGTTCAACTAGATGGGAAACCAATGAAAGTAGAGATTGTGGGAGCAAACATTTCTTCACCTAGTGTGCCCCCTGCTTTAAGTGGAGCTTTTGGGAACAGGATTGGAGTTCCTCAAAGTAGACAAGGAAGAGGAGGGGCATTACGAAGGCCAGGAGGTAGAGGGCAAGGCATTCGAGGGAATCGGGGACGTGGAAGAGGCCGCGGTGGAGGTCGTGATGAAAAGGTTTCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGTCAATGCAATTGAACTAA 735 0.5156 MSAGLDMTLDDLIKTNKKSGSGNFRGRSGPGPARRIPNRSGNRTAPYAATAKAPETAWQHDLYGDQALPPYPVAHDARAPPSLETGTKLLISNLDYGVSNDDIKELFGEVGDLKRHGVDYDRSGRSKGSAVVVFSRRADAIAAVKRYNNVQLDGKPMKVEIVGANISSPSVPPALSGAFGNRIGVPQSRQGRGGALRRPGGRGQGIRGNRGRGRGRGGGRDEKVSAEDLDADLEKYHAESMQLN* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0737 244 Gene3D - 74 226 IPR012677 -
Lja3g0737 244 Pfam C-terminal duplication domain of Friend of PRMT1 188 239 IPR025715 -
Lja3g0737 244 MobiDBLite consensus disorder prediction 1 47 - -
Lja3g0737 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Lja3g0737 244 SMART FoP_duplication_2 175 244 IPR025715 -
Lja3g0737 244 SUPERFAMILY RNA-binding domain, RBD 68 193 IPR035979 GO:0003676
Lja3g0737 244 MobiDBLite consensus disorder prediction 214 237 - -
Lja3g0737 244 CDD RRM_THOC4 87 161 - -
Lja3g0737 244 MobiDBLite consensus disorder prediction 182 244 - -
Lja3g0737 244 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 243 - -
Lja3g0737 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Lja3g0737 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 243 - -
Lja3g0737 244 SMART rrm1_1 88 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0737 Lja-Chr3 7477428 7481912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0737 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 1.63e-08 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0737 3 7477428 7481912 Lja3g0737 3 7477428 7481912 ECH
Lja3g0737 3 7477428 7481912 Lja6g0563 6 13552939 13557580 ECH
Lja3g2792 3 42265082 42268908 Lja3g0737 3 7477428 7481912 PCT