Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0723 ATGGAGGTTGTTGTTGAGGTTGAGATAGCTGGCTCGGTGATTGAGCTGGTGAATGAGATAGCTAGCATCTCTGACTTCAGACCTATGGTGAAGAAGCAGTACTGCAACTTGGCACGCAGGTTGAAGCTTCTCGTGCCTTTGTTCGAGGAAATTAGGGACATGAAAGATCCCATCACTGACGAAACTTCGAAATCCATGCTTGCTTTTAAGGAAGCTCTTGAATCTGCAAAGGAGCTTCTCAAATTCGGATGTGAAGGCAGCAAGATTTACATGGTTCTTGAGAGGGACCAAATCATGAACAAATTCTATGAGGTGACAGCTCGGCTGGAACAATCATTGAATGGAATTTCCTATGATAAACTTGACATTTCTGATGAAGTTAAGGAGCAGGTTGAATTGGTTCTTGCCCAGTTTAGAAGAGCCAAAGGAAGGGTTGATGAACCTGATGTCAAGTTGTATGAGGATATATTGTCCCTTTACAATGATAGTAGTGATGCAGCTACAGATCCAGCTGTTCTTAGCCGATTAGCTGAAAAATTGCAATTGATGGGGATAGCCGATTTTATTCATGAATCTCTCACATTACATGACATGGTGGGAGCGAGTGGTGGGGATCCAGGGGCACGCATCGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATTATGTGCAAACTGAAAACCTAGTCAAGGATGATAATGTTGGAGCAAAAGGCCTTCCTTCAAGCGTTAGCAGATTAGGGTCAATCGAAAAGAATCATCCGGCCCTTGTTATCCCTACTGATTTTAAATGTCCGATTTCCTTGGAATTGATGCAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGCTGGGCATGGGACATGCCCAAAAACACAACAGAGTCTCACTAGTACTGTTCTCACACCCAACTACGTGTTACGGAGCCTCATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACCTCTCAACCTAGCAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAATCTTCTCCAAAAGCTCTCATCTGGTAATCCTGAAGACCAGAGATTAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCAGATAATCGGGTCGCAATTGCTGAAGCTGGAGCAATACCTCTCCTTGTTGGTCTCTTGTCCGTGCCCGACTCTCGCACTCAAGAGCATGCTGTGACAGCGCTTTTGAATCTTTCCATATATGAGAATAACAAAGGGTGCATTGTGTCTTCTGGAGCAGTCCCAGGTATAGTTCATGTGCTGAGGAAAGGAAGCATGGAAGCCCGTGAAAATGCAGCAGCAACACTTTTCAGCCTTTCGGTTGTGGACGAAAACAAGGTTACAATTGGTTCTTCAGGAGCCATACCGCCGCTAGTGACGCTGCTGAGTGAAGGTACCCAAAGGGGTAAGAAAGACGCTGCAACAGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAAGGAAAGGCGGTGAGGGCGGGTGTTATTCCCACACTGATGAAACTGCTGACAGAACCAAGTGGAGGAATGGTGGACGAAGCATTGGCCATTTTGGCAATCTTGTCTAGTCATCCTGATGGGAAGGCTGCGATTGGTGCTGCAGATGCGGTTCCAATTTTGGTAGAGTTTATTGGGAATGGATCGCCGAGGAACAAAGAGAACTCAGCTGCTGTTTTAGTGCACCTTTCTTCTGGTGATCAACAATATCTAGCACAAGCACACAAACTAGGGTTGATGACTCCTTTGTTGGAACTGGCTCAACATGGTACAGATAGAGGCAAAAGAAAGGCGGCACAATTGATAGATCGCATGAGCAGGTTTCTTGAGCAGCAGAGGCAGCAGCAGGAGCAGGTGGAGGAAGTTCAAACACAAACTGAACCTCAAGCTCAGAATGAGGATATCGAACCACCTTCAATTTCTAACCTTGATGATACCTGA 2016 0.4573 MEVVVEVEIAGSVIELVNEIASISDFRPMVKKQYCNLARRLKLLVPLFEEIRDMKDPITDETSKSMLAFKEALESAKELLKFGCEGSKIYMVLERDQIMNKFYEVTARLEQSLNGISYDKLDISDEVKEQVELVLAQFRRAKGRVDEPDVKLYEDILSLYNDSSDAATDPAVLSRLAEKLQLMGIADFIHESLTLHDMVGASGGDPGARIEKMSMLLKKIKDYVQTENLVKDDNVGAKGLPSSVSRLGSIEKNHPALVIPTDFKCPISLELMQDPVIVSTGQTYERSCIEKWLQAGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSQPSKSASACTPAERSKIENLLQKLSSGNPEDQRLAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYENNKGCIVSSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMKLLTEPSGGMVDEALAILAILSSHPDGKAAIGAADAVPILVEFIGNGSPRNKENSAAVLVHLSSGDQQYLAQAHKLGLMTPLLELAQHGTDRGKRKAAQLIDRMSRFLEQQRQQQEQVEEVQTQTEPQAQNEDIEPPSISNLDDT* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0723 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515
Lja3g0723 671 PANTHER U BOX DOMAIN-CONTAINING 9 648 - -
Lja3g0723 671 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Lja3g0723 671 SMART arm_5 468 508 IPR000225 GO:0005515
Lja3g0723 671 SMART arm_5 550 590 IPR000225 GO:0005515
Lja3g0723 671 SMART arm_5 427 467 IPR000225 GO:0005515
Lja3g0723 671 SMART arm_5 386 426 IPR000225 GO:0005515
Lja3g0723 671 SMART arm_5 592 632 IPR000225 GO:0005515
Lja3g0723 671 SMART arm_5 509 549 IPR000225 GO:0005515
Lja3g0723 671 Gene3D - 3 118 IPR036537 GO:0007166
Lja3g0723 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Lja3g0723 671 CDD RING-Ubox_PUB 263 305 IPR045210 -
Lja3g0723 671 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 648 - -
Lja3g0723 671 Coils Coil 630 650 - -
Lja3g0723 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Lja3g0723 671 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Lja3g0723 671 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Lja3g0723 671 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lja3g0723 671 SUPERFAMILY RING/U-box 258 335 - -
Lja3g0723 671 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Lja3g0723 671 Gene3D - 343 668 IPR011989 -
Lja3g0723 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Lja3g0723 671 MobiDBLite consensus disorder prediction 635 671 - -
Lja3g0723 671 SUPERFAMILY ARM repeat 357 639 IPR016024 -
Lja3g0723 671 Pfam Neurochondrin 520 643 IPR008709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0723 Lja-Chr3 7305828 7310911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0723 10 658 U-box Gene Family AT3G46510 68.558 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0723 - - pvu:PHAVU_011G064700g 1072.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0723 3 7305828 7310911 Lja3g0723 3 7305828 7310911 ECH