Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0717 ATGGGTAACGGGATAGGGAAGTTGACGGTGTGTTTCACCGGCAACGGCGGTGGCCGGAAGCACGATATATCGATTTTATTCACGGAGCCACTGGATGAAGGATTGGGTCACTCGTTCTGCTACGTGAGACCCGACCCGACCCGGATGTCGTCGTCGAAGGTTCACTCAGAGGAAACGACGACGTTCAGAACGATCTCCGGCGCTTCTGTCAGCGCCAACACGTCAACACCGTTGTCGACGGCGTTCATGGATTTGTACTCGTACGGTTGTATTGATAGAGCTGCGGCGTTTGAGAGCTCAACCTCCTTCGCCTCGCTTCCTCTGCAACCGATTCCGAGGAGCTTCATGAATTCCGGTACGTTTTCTGGGAATCTCGGAGCTGGAGGTGGGTTTCCGAGTTCGGGTACTTTGGAGAGAGGGTTTCTCTCGGGTCCGATTGAGCGTGGGTTCATGTCGGGTCCGATTGATCGGAGCGGGTTGTTTTCGGGTCCGATGGAGAAGGACGGCGGCGGAGAGCAGTTTCAGAGGAGCTTCTCCCATGGCGGTGGTTTTACGGTGAGGCCCAGGACGAGGAAGAGTCGGTGGATTAAGGCGCTGAGGAGGGCGATATCGAAGACTCTGCCTCGTGGGCAGAACTCGATTGTTACTCCGATTAAAGGAGTGGCGGCGAAGGAGCCGGAGTGGATCGCTGCTGCGGCGGCGGCGGCGGAGAAGCAGCAGCAGCATAACGAGAATTTGAGTGTGAATTTGAGCAGCGAAGGTAGTTTGGAAGACGATGATTCGATGGAGAGTCAGAATCTTCAGTGGGCACAGGGGAAAGCAGGGGAGGACCGCGTTCACGTGGTGGTATCGGAGGAACACGGTTGGGTCTTCGTCGGAATCTACGACGGTTTCAACGGTCCTGATGCACCTGATTATCTTCTCTCAAATCTTTACAACTACGTGCACAAGGAACTGAAAGGGTTGCTCTGGGATGATGGGGTTGCTCCAGAGAATTCGAATTTGGAAGAAACGCAAGAAGATTCGATGGTGATCGGTGATATTGATGTTGATGATGGTGTTGTTGGGAAAAATGATGATCACAGGTTTGCAGATGCTTGTGCTTGTGCAAGTGGTGATGCGGTTCCGAAGGGAAAAATAGGGAAGAATTCTAAGAAAGCTGCATCCAAGAAACGAGAGGAGAATCAGAGAAGGTGGAAGTGTGAGTGGGATCGTGAGAGATTAGAGCTTGATCGAAGATTAAAGGAGCAACTAAATGGAACTCGATCCGGGTCTTGTAATGGTGGTTCTATTAACCATGCTGATGTGTTGGAAGCTCTATCTCGAGCTCTGAGGAAGACAGAGGAGTCTTACCTTGATGTCGCGGATAAGATGCTAGGCGAAAATCCGGAGCTTGCTTTGATGGGTTCTTGTGTTCTTGTGATGTTGATGAAAGGGGAAGATGTTTATGTGATGAATGTGGGGGATAGTAGAGCTGTGTTGGCTCAAAAGGCTGAGCCTGATTACTGGATTGGGAAGATCAGACAGGACTTGGAGAGAATCAATGAAGAGACCATGAATGATCTTGAGTCATGGGATGCAGACACATCTAATCTTGTTCCCACTCTAAGTGCACTTCAGCTTACAAAGGATCATAGTACCAATGTTGATGAGGAAGTTTATAGAATAAAAAGAGAGCACCGGGATGATCCTTGTGCTGTGGTAAATGATCGTGTTAAAGGCTCTCTCAAGGTTACTCGAGCATTTGGTGCTGGATTTCTCAAACAGCCCAAGTGGAACAATGCACTTCTGGAGATGTTTAGAATAGACTATGTAGGAAACTCTCCTTACATCACCTGCCTACCATATCTAAAACACCACAGATTAGGCCCAAAGGACAAATTTTTGATCTTGTGCTCCGACGGGCTCTACCAGTACTTGTCGAACGAAGAAGCGGTAGCCGAAGTTGAGCTTTTTATCACGTTGCAACCCGAGGGAGACCCGGCTCAGCATTTGATTGAAGAGGTGCTGTTCCGCGCTGCAAAGAAAGCTGGTTTGGACTTTCATGAGTTGCTAGAAATTCCACAAGGCGATAGGCGTCGTTACCATGATGATGTTTCCATCATTGTTATTTCTTTGGAAGGAAGGATATGGAGATCATGTGTATAA 2148 0.4926 MGNGIGKLTVCFTGNGGGRKHDISILFTEPLDEGLGHSFCYVRPDPTRMSSSKVHSEETTTFRTISGASVSANTSTPLSTAFMDLYSYGCIDRAAAFESSTSFASLPLQPIPRSFMNSGTFSGNLGAGGGFPSSGTLERGFLSGPIERGFMSGPIDRSGLFSGPMEKDGGGEQFQRSFSHGGGFTVRPRTRKSRWIKALRRAISKTLPRGQNSIVTPIKGVAAKEPEWIAAAAAAAEKQQQHNENLSVNLSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYNYVHKELKGLLWDDGVAPENSNLEETQEDSMVIGDIDVDDGVVGKNDDHRFADACACASGDAVPKGKIGKNSKKAASKKREENQRRWKCEWDRERLELDRRLKEQLNGTRSGSCNGGSINHADVLEALSRALRKTEESYLDVADKMLGENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWIGKIRQDLERINEETMNDLESWDADTSNLVPTLSALQLTKDHSTNVDEEVYRIKREHRDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYITCLPYLKHHRLGPKDKFLILCSDGLYQYLSNEEAVAEVELFITLQPEGDPAQHLIEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0717 715 PANTHER PROTEIN PHOSPHATASE 2C 17 715 IPR015655 GO:0004722|GO:0006470
Lja3g0717 715 SUPERFAMILY PP2C-like 273 707 IPR036457 -
Lja3g0717 715 SMART PP2C_4 260 704 IPR001932 -
Lja3g0717 715 Coils Coil 508 528 - -
Lja3g0717 715 Gene3D - 232 711 IPR036457 -
Lja3g0717 715 PANTHER - 17 715 - -
Lja3g0717 715 MobiDBLite consensus disorder prediction 251 271 - -
Lja3g0717 715 Pfam Protein phosphatase 2C 436 662 IPR001932 -
Lja3g0717 715 ProSiteProfiles PPM-type phosphatase domain profile. 259 706 IPR001932 -
Lja3g0717 715 CDD PP2Cc 435 706 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0717 Lja-Chr3 7175608 7179352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0717 1 715 PP2C-type Phosphatase Gene Family AT1G07630 67.218 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0717 - - gmx:100810214 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0717 3 7175608 7179352 Lja3g0717 3 7175608 7179352 ECH