Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0707 ATGGTGGATCCTCATTTCAAGTCCAATTTCACCAACAGTGGTAAATTGAACCAAGTTCCCAATACACTCCACATGGAGGATCATAGCTCTGGATTCATGGACAATCCATTTCTTCTTCCACCTGTTCCAAACAATGCTCAAAACCATGCTTCCCTGTCCACCATTGCTACATATGATGAGGACTCTCCCTTGGATGACACTGATTTCTCTGCTACTGTCTTGCATTATATAAACCAAATGCTTATGGAAGAGGACATGGAGAAGAAGACCTGTATGTTCCATGATTCTTTGGCCCTCCAAGCTGCTGAGAAATCTTTCTCTGAGGTCATTGGTGAGACATACCCTTCTTCTTCCATCCAAAACTATCACAATGTGGAGAGCCCTGATGACAGTCTCAACAGTAATTTCAGTGGTTATACTTATAGCAGCAGTGGCACAGCTAGTACTAGCAGCTCAATTGAGTCCAACTGGGGTAATGTTGATCTTGCTGAGTACAAGCCTTCTATACTGCAAACCGCTTTTCCTCCTGACTTTGTTTTCCATGCCAGTTCAACCTCTAACTCCCAATCTTATATGAACAGCACTAGTAGTTTCGGTGCAACAGATAGTGGATTCGTGGCAAGTTCCAGGGCTGGATTTTCAGATCAAACATTGCTTTGCAAGAGTGATTCTGTGCTTCAATTTGAGAGAGGTTTTGAGGAAGCCAGTAAGTTTCTTCCTAAAACGAATCCATTAGTTATTGATTTTGAGAACAGGTCACATGGCTATATCCCTTCGATTAGAAAGGTTCCTCAGCAGGAGGTAATTAAGATTGAGGCGGATGAAAATAAGCATTTTTCCGCTGAGCCGAGAGGAAGGAAGAATCATGAGAGGGAGGATGAAACAGATTTACAAGATGGGAGAAGCAACAAGCAGTCAGCTGTTTACACCGATGACAGTGAGCTATCAGAATTATTTGATAAGGTACTGCTGGGCGTGCCGTGTGGAAATCAGGAAGCTCCTTCGTGTATCCTCAAGGAAGAGCAGCCTAATGGACCTGACATTAGCATGGGGAAGAAAGAAGAAACAAACAAGTCTGGTGGTGGAAAGAGCCGTGCTAAGAAACAAGGAGACAAGAAGGGAGTTGTGGATCTGAGGTCACTATTGATTCTATGTGCACAAGCTGTTTCTTCTGATGATCGAGCGACTGCCAGTGATTCGCTAAAGCAGATAAGGCAACACTCATCCCTGTTGGGAGATGGATCTCAGAGGCTGGCACATTGCTTTGCAGATGCCCTCGAAGCACGGATGGCCGGCATTGGCGCACAGACTTATACTGCTTTATCTTCCAAAAGAACCTCCGCTGCAGACATGGTGAAAGCTTACCAAATGTATATTTCAGCCTGCCCATTCAAGAAGCTTGCAATCATTTTTGCAAACCATACAATTTTGAACCTAGCTAAGGAAGTTGAAACTCTTCACATTGTAGATTTTGGCATCCGGTATGGCTTCCAGTGGCCAGCCCTTATTTATCGTTTATCAAAACGACCTTGCGGTCCGCCCAAGCTGCGCATCACAGGGGTTGAGCTCCCACAGCCTGGTTTCAGGCCAGCAGAGAGAGTCCAGGAGACAGGGCTTCGCCTGGCAAGGTATTGTGATCGCTTCAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAACTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGCAGTGAATTGTATGTGCAGATTCAAAAATCTACTTGATGAGACAGTTGTTTTGAATAGCCCTAGGGATGCAGTTTTAAACTTGATTAGGAAGGCAAATCCCACTATCTTTATGCAGGCTAGTCTCAACGGGAGCTATACTGCCCCATTCTTCGTGACACGGTTCCGGGAGGCTCTTTTCCATTACTCTACATTGTTTGATGTGCTTGACACCAATGTTGCTCGTGAAGATCGAATGAGGTTGATGTTTGAGAAAGAGTTCTTTGGGAGGGAAGTGATGAATATTATAGCTTGTGAGGGTTCTGAGAGGGTTGAGAGGCCTGAGACATACAAGTTATGGATGGTTAGGAATACGAGGGCTGGTTTCAGGCAACTTCCCTTGGATAAACATCTCATTAACAAGTTAAGGTCCAAGTTGAAAGATGCGTACCACAGTGATTTCATGCTTGTTGAAGATGGCAACTTCATGTTGCAAGGTTGGAAAGGCCGTATAATATATGCTTCCTCTTGTTGGGTACCTGCATAG 2256 0.4419 MVDPHFKSNFTNSGKLNQVPNTLHMEDHSSGFMDNPFLLPPVPNNAQNHASLSTIATYDEDSPLDDTDFSATVLHYINQMLMEEDMEKKTCMFHDSLALQAAEKSFSEVIGETYPSSSIQNYHNVESPDDSLNSNFSGYTYSSSGTASTSSSIESNWGNVDLAEYKPSILQTAFPPDFVFHASSTSNSQSYMNSTSSFGATDSGFVASSRAGFSDQTLLCKSDSVLQFERGFEEASKFLPKTNPLVIDFENRSHGYIPSIRKVPQQEVIKIEADENKHFSAEPRGRKNHEREDETDLQDGRSNKQSAVYTDDSELSELFDKVLLGVPCGNQEAPSCILKEEQPNGPDISMGKKEETNKSGGGKSRAKKQGDKKGVVDLRSLLILCAQAVSSDDRATASDSLKQIRQHSSLLGDGSQRLAHCFADALEARMAGIGAQTYTALSSKRTSAADMVKAYQMYISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPCGPPKLRITGVELPQPGFRPAERVQETGLRLARYCDRFNVPFEFNAIAQKWETIKLEDLKIKKNELLAVNCMCRFKNLLDETVVLNSPRDAVLNLIRKANPTIFMQASLNGSYTAPFFVTRFREALFHYSTLFDVLDTNVAREDRMRLMFEKEFFGREVMNIIACEGSERVERPETYKLWMVRNTRAGFRQLPLDKHLINKLRSKLKDAYHSDFMLVEDGNFMLQGWKGRIIYASSCWVPA* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0707 751 PANTHER SCARECROW-LIKE PROTEIN 14 43 750 - -
Lja3g0707 751 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g0707 751 MobiDBLite consensus disorder prediction 335 372 - -
Lja3g0707 751 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 750 IPR005202 -
Lja3g0707 751 Pfam GRAS domain family 378 748 IPR005202 -
Lja3g0707 751 MobiDBLite consensus disorder prediction 272 312 - -
Lja3g0707 751 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g0707 751 ProSiteProfiles GRAS family profile. 369 749 IPR005202 -
Lja3g0707 751 MobiDBLite consensus disorder prediction 272 300 - -
Lja3g0707 751 MobiDBLite consensus disorder prediction 346 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0707 Lja-Chr3 7082565 7085873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0707 73 751 GRAS Transcription Factor Family AT1G07530 55.398 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0707 GRAS 1.2e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0707 - - gmx:100815586 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0707 3 7082565 7085873 Lja3g0707 3 7082565 7085873 ECH
Lja3g3172 3 60957118 60960371 Lja3g0707 3 7082565 7085873 ECH
Lja3g2765 3 40902626 40932477 Lja3g0707 3 7082565 7085873 PCT