Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0706 ATGGATCCAAATTTTTCTGGAACAAGCAATTTCACAAACAGCTTCCGTGTTGATGAAGAAGGGAGCATAATTGTCTCGGATCCAAATCAATATGATGCATACTGGGATGTGTATCAACAATATAGCAGTCTCTTAGCTGTTAACCCTAATGGTTTTGCAGGAAATTCAAACCCTGAAGAAGGTTCTGCTGCTGTTTCATCCATGTCCATGAACTCTGTGACAGAACCTTCTCTGGAAGACTCTGACTATTTTGAAACCACCAAATTCATTAGCCAAATTCTGATGGATGAGTATGGTGAAGAGAGTCCAATTTTTGACCCATTGAGCTTGCAACTCACTGAGAAATCATTCCATAATGCTCTGTTTGACAATCAATACCCCTTGAATGTTCAAAGCCCTAATGGTGAAACCACTAGCAGCAGCAGTAACTGCAGCAGCAGCAACAGCTATTCACACAGCAATGACAATTCTTGTGAGTTGAACCCCCCTTCTGTAAATACACCTGTTGCTGTTATTGGTGATCATGCTTTTCAGCTTAACTCTCATGGACTGCTAGATTTGGATTCTCCTGTTAGCAAACCGTTGGCAGCGCTGGATATTTTCAGTGGTGCAGATTCTGAATCCCAGTTTAGGAGAGGGTTAGAGGAGGCTACTAAGTTTCTTCCTTCTCCGGAACCCCGGATTGTGACGGGTGTAGAGTCGTGTGGAGAATCGTCTTCTAATATGGCTGAGGAGAATTCTCTTGGGTTGAAGTGTAGGAGAAAGAATCGTGAGCGTGGAGAAAGTGATTCTAAGGAAGAAGGGAGATGTAACAAGCAATCAGCAGTTAGTGCTGCTCTTGTTGATGAGGATGACTTGTCTGATGTGTTTGATCGAGTGCTGGTTAACATGGATCGTTTACCACAGGGTAATGAACATGGTCCGTTGAAGGATGGCGCGGAGAAAGTCAAGCAGCGAGGTGAAAAGCCACCTTCATCTGATGAACACGGCTCGTTGCAGGATGGCGCGGAGAAAGCGAAGCAGCGAGGTGAAAAGCCGCCTTCATCTAATGGAGGGAAGGCTCGGCCTAAGAAACAAGGCAGGAAGAAGGAAACGGTGGATATTAGGTCTCTTCTGCTTCTGTGTGCGCAAGCTATTCATGCCAATGATAATAGAGCTGCTAATGAACTTCTAAAGCAGATAAGGAAGCATTCTTCTCCCTTTGGTGATGGGTCACAAAGATTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGATGGGGATGTTGCCGCTGCACAACTATTTTTTTATGCTCCTACCTACAAGACAACCTCAGCTGCTGATTTTTTGAAAGGTTATCAAGTTTATCTATCTGCTAATCCATTTAGGAAGTTTGCACATTTCTATGCTAACAAAATGATTAAGAAAGCAGCTGCCAAAGCTGAAACCCTTCATGTTATTGATTTTGGCATCTTCTACGGCTTCCAGTGGCCATTACTCATCAAGTTTTTATCAGAGAGAGATGGTGGACCTCCCAAGCTGAGGATCACAGGAATAGAATACCCTTTACCTGGCTTTCGTCCCACAGAACGACTTGAGGAAACTGGTCGTCGCTTGGCCAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATGCTGTAGCATCAAGGAACTGGGAAACCATTCGAGTTGAAGACCTTAAAATTAAGAGCAACGAGTTTGTTGCTGTGAACTGTATGCTTAGGTTCAAGAATTTGCTGGATGAGACTATTGAAATGAACAGTCCTAGAGATGCAGTTCTGCATTTGATCAGGAGGATAAATCCAGATATTTTTGCTCACTCCATCATAAATGGATCTTTCAATGCCCCTTTTTTCGTCACTCGGTTTAGGGAGGCCTTGTTCTATTTTTCTGCTGTTTATGATATTTGTGACAGTGTCATACCCCGGGATAACCAATGGAGGATGATGATTGAGAGGGAGATGGTGGGCCGGAACGCTATGAATGTGATAGCATGTGAAGGTTTGGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACAAGGGCTGGTTTCAAGCAGCTTCCTCTGAACCAGAAATTAATGGCAAAATTTAGGACCACGTTAAGGAAATGGCACTCCAGTGATTTTTCCTTTGATGAAGACAACAATTGGATGCTTCAAAGTTGGAAAGGCCGCATTTTGTCTGGTTCTACTATTTGGGTTCCAGCATGA 2238 0.4374 MDPNFSGTSNFTNSFRVDEEGSIIVSDPNQYDAYWDVYQQYSSLLAVNPNGFAGNSNPEEGSAAVSSMSMNSVTEPSLEDSDYFETTKFISQILMDEYGEESPIFDPLSLQLTEKSFHNALFDNQYPLNVQSPNGETTSSSSNCSSSNSYSHSNDNSCELNPPSVNTPVAVIGDHAFQLNSHGLLDLDSPVSKPLAALDIFSGADSESQFRRGLEEATKFLPSPEPRIVTGVESCGESSSNMAEENSLGLKCRRKNRERGESDSKEEGRCNKQSAVSAALVDEDDLSDVFDRVLVNMDRLPQGNEHGPLKDGAEKVKQRGEKPPSSDEHGSLQDGAEKAKQRGEKPPSSNGGKARPKKQGRKKETVDIRSLLLLCAQAIHANDNRAANELLKQIRKHSSPFGDGSQRLAHYFANGLEARLDGDVAAAQLFFYAPTYKTTSAADFLKGYQVYLSANPFRKFAHFYANKMIKKAAAKAETLHVIDFGIFYGFQWPLLIKFLSERDGGPPKLRITGIEYPLPGFRPTERLEETGRRLANYCKRFNVPFEYNAVASRNWETIRVEDLKIKSNEFVAVNCMLRFKNLLDETIEMNSPRDAVLHLIRRINPDIFAHSIINGSFNAPFFVTRFREALFYFSAVYDICDSVIPRDNQWRMMIEREMVGRNAMNVIACEGLERIERPETYKQWQVRNTRAGFKQLPLNQKLMAKFRTTLRKWHSSDFSFDEDNNWMLQSWKGRILSGSTIWVPA* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0706 745 ProSiteProfiles GRAS family profile. 359 743 IPR005202 -
Lja3g0706 745 MobiDBLite consensus disorder prediction 299 364 - -
Lja3g0706 745 Pfam GRAS domain family 369 742 IPR005202 -
Lja3g0706 745 MobiDBLite consensus disorder prediction 304 344 - -
Lja3g0706 745 MobiDBLite consensus disorder prediction 233 278 - -
Lja3g0706 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 320 IPR005202 -
Lja3g0706 745 MobiDBLite consensus disorder prediction 128 162 - -
Lja3g0706 745 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 326 744 IPR005202 -
Lja3g0706 745 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 326 744 - -
Lja3g0706 745 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 70 320 - -
Lja3g0706 745 MobiDBLite consensus disorder prediction 248 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0706 Lja-Chr3 7079104 7081925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0706 88 745 GRAS Transcription Factor Family AT1G07530 44.101 8.82e-180 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0706 GRAS 1.2e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0706 - - lja:Lj0g3v0303739.1 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0706 3 7079104 7081925 Lja3g0706 3 7079104 7081925 ECH
Lja3g0706 3 7079104 7081925 Lja3g2765 3 40902626 40932477 ECH
Lja3g2764 3 40880328 40882334 Lja3g0706 3 7079104 7081925 PCT
Lja3g0706 3 7079104 7081925 Lja3g2765 3 40902626 40932477 PCT