Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0703 ATGGATCCAATCTTTTCTGGGGCCAGCGATTTCACAAACGGATACCAGTTTTGTGAAGAAGGGAGCATATTTGTCGCGGATCCAAATCCATATGCAGAATACTTGGATGTGTTTCATCAACATGGGAACCTCTTAGATGTTGAACCCCTTGGTTTTGCAGCAAATACGAGCCCTGTACAAGGTTCTGTGACATCCATGTCCATGAACTCTGTGACAGATCCTTCTCTGGAAGACACTGACTTCTCAGAAACCACCAAGTTCATAAGCCAAATCCTGATGGAAGAGAACCTTGAACAGGGTCCATTTTATGACTCCCTGGACCTGCAACTCACAGAGAAATCATTCCATGATGCTCTCATAGACAACAACTCATCTCTATCGCCTAATCAACACCCCTTAGATGTTCAAAGCCCTTACGGTGAAACCACTAGCAGTGACAGTGACAACAACAGCAATTTACACTACAATTCTTGTGAGTTGAATCCCCCTCCTCTTGATACCCCAGTAGCTGTTATTGGTGATCATGCTTTTCAGCTTAACTCTCATGGACTGCTAGACTTGGATTCTTCTGTTACCAATCAATTGGCACAAAATATTTTCAGTCATGCAGATTCTGTCTCCCAATTTAGGAGAGGATTAGAGGAAGCTACCAAGTTTCTTCTTCCTCCAGAACCCCAGATTGTGACTGGTGTAGGGTCATGTGGAGAATCATCGGATACAGTTGCAGAGAATTCATTTGGTTTAAAGGGTAGTAGAAAGAATCGTGAGCGTGGAGAAAGTGATTTTGAGGAAGAAAAGAGAAGTAACAAGCAATCAGCAGTTGGTGTTGTTGATGAGGTGGATGACTTATCTGATATGTTTGATCGAGTGCTGGTTCATATGGAACAATTGCCACTTGGTAATGAACACGGTTCCCGAGAGAGTGGCGCAGCAAAAGAGATGCAGCAAGGTGAAAAGACACCATCATCTGATGGAGGGAAGGCTCATCCAAAGAAACAAGGCAGGAAGAAAGAAACAGTGGATTTGAGGGCACTTCTGCTTCTTTGTGCACAAGCTATTCATACCAATGACAACAGGGGCGCTAGTGAACTTCTAAAGCAGATAAGGCAGCATTCTTCTCCCTTTGGTGATGGGTCACAAAGATTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGTTTGGGGATGTTACCGGTGCACAATTATTTAATTCTACTCCTACCCACAAGACAACCTCTGCTGATGATTTCTTAAAAGGTTACCAAGTTTATCTATCTCCTAACCCAAGCAGAAAGTTTGCACATTTCTATGCTAACAAAATGATTAAGAAAGCATCTGCAAAAGCTGAAACTCTGCATATTATTGATTTTGGTATCTTATATGGCTTCCAGTGGCCATTACTCATCAAGTTTTTATCAGAAAGAGAAGGTGGACCTCCGAAGCTGAGGATCACAGGGATAGAGTTCCCTTTACCTGGCTTTCGCCCCACACAAAGGATTGAGGAGACTGGTCGTCGTTTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACACTGCCATAGCATCACGGAACTGGGAAACCATTGGAGTTGAAGACCTTAAAATTAAGAGCAACGAGTTTGTTGCGGTAAACTGCATGATGAGGTTCAAGAATTTGCTGGATGAGACTAGTGAAATGAACAGTCCCAGAGATGCTGTTCTGCTTTTGATCAGGAAGATAAATCCAGATATTTTCGCTCAGGCCATCATTAATGGATCTTTCAGTACCCCTTTCTTTGCCACACGGTTTAGGGAGGCCTTGTTCCATTTTTCTGCTGTTTTTGACATGCTTGACACTGTCATATCCCGGGAAAACCAATGGAGGATGATGAATGAGAGGGAGATCATAGGTCCGAACTCTATGAATGTAATAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAGGTTAGGAACACAAGGGCTGGCTTCAAGCAGCTTCCTCTGAACCAGAAATTAATGGCCAAATTTAGGAGCAAGTTAAGGAAATGGCAACCGGATAATTTTTTGATTGATGAAGACAGCAATTGGATGCTTCAGAGTTGGAAAGGACGCATTCTGTCTGGTTGTACTATCTGGGTGCCTGCAAAATGA 2163 0.4327 MDPIFSGASDFTNGYQFCEEGSIFVADPNPYAEYLDVFHQHGNLLDVEPLGFAANTSPVQGSVTSMSMNSVTDPSLEDTDFSETTKFISQILMEENLEQGPFYDSLDLQLTEKSFHDALIDNNSSLSPNQHPLDVQSPYGETTSSDSDNNSNLHYNSCELNPPPLDTPVAVIGDHAFQLNSHGLLDLDSSVTNQLAQNIFSHADSVSQFRRGLEEATKFLLPPEPQIVTGVGSCGESSDTVAENSFGLKGSRKNRERGESDFEEEKRSNKQSAVGVVDEVDDLSDMFDRVLVHMEQLPLGNEHGSRESGAAKEMQQGEKTPSSDGGKAHPKKQGRKKETVDLRALLLLCAQAIHTNDNRGASELLKQIRQHSSPFGDGSQRLAHYFANGLEARLFGDVTGAQLFNSTPTHKTTSADDFLKGYQVYLSPNPSRKFAHFYANKMIKKASAKAETLHIIDFGILYGFQWPLLIKFLSEREGGPPKLRITGIEFPLPGFRPTQRIEETGRRLANYCKRFNVPFEYTAIASRNWETIGVEDLKIKSNEFVAVNCMMRFKNLLDETSEMNSPRDAVLLLIRKINPDIFAQAIINGSFSTPFFATRFREALFHFSAVFDMLDTVISRENQWRMMNEREIIGPNSMNVIACEGFERVERPETYKQWQVRNTRAGFKQLPLNQKLMAKFRSKLRKWQPDNFLIDEDSNWMLQSWKGRILSGCTIWVPAK* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0703 720 MobiDBLite consensus disorder prediction 231 247 - -
Lja3g0703 720 MobiDBLite consensus disorder prediction 121 160 - -
Lja3g0703 720 MobiDBLite consensus disorder prediction 298 336 - -
Lja3g0703 720 Pfam GRAS domain family 342 716 IPR005202 -
Lja3g0703 720 MobiDBLite consensus disorder prediction 249 272 - -
Lja3g0703 720 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 68 718 IPR005202 -
Lja3g0703 720 ProSiteProfiles GRAS family profile. 333 717 IPR005202 -
Lja3g0703 720 MobiDBLite consensus disorder prediction 231 277 - -
Lja3g0703 720 MobiDBLite consensus disorder prediction 121 158 - -
Lja3g0703 720 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 68 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0703 Lja-Chr3 7011865 7015200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0703 78 718 GRAS Transcription Factor Family AT2G29060 46.237 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0703 GRAS 6.8e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0703 - - lja:Lj0g3v0303739.1 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0703 3 7011865 7015200 Lja3g0703 3 7011865 7015200 ECH
Lja3g0703 3 7011865 7015200 Lja3g2764 3 40880328 40882334 ECH
Lja3g0703 3 7011865 7015200 Lja3g2764 3 40880328 40882334 PCT