Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0700 ATGATCTCTATGGATTCCCTTTTGGAAAATTTCCCTGGTTCCCTGAACGGATGCATGTTTGGGAACGGTCCTGTATCTGTGTTTTCAAATCAGAACCCAGGTAGTGGGTTGAATGTGGAAGATTCATCATCCCCTTCAAACCATTCAGAATTGGCTGCTGATTCTGGTCCTTCTGCTGCTGCTGCTGTTGGCACAACCTCAAGCTCAAATGGGGAATCTGGAGAGAGTAGTAAGCATTCCAATCCCATTCTCAGATACATCAGTGACATCCTCATGGATGAAGAAGACGATCTGGAGCGTAAACCCTGCATGTTGCAGGATTGTTTGAGGCTCCAAGCTGCTGAAAAATCATTCTATGATGTGCTCGGTCGAAGCTATCCTTCATCGCCGCACCAAGTCCAGGGTGGTTTCCGTGATGATAACGCTGATCCAGATGATGGTTTTGGTGGGGGAACTACTAGTTCTGAGGGATATAGCAGTAACACCACTGATACTTCATGTGAGTCTGATTTGGTTAACGGTGCTGGTGATTTCGAGTCTTATTTTCGGCAAAGAGCTCTAGTTGATTCCCCAGGCAATAGCTCTGAGGTTTTGGATGGAGTACCTCTTGATCCATTGAGAGGTACACAACCTGGTGCCCTTTTTTCAAATGGAGCCTTGGATGTGATTCAATGGAAGGTTAAGCCACAGGTGATTCAAGAGAGTGTGATTCGGGGTTCTGCGGCAACCAAAGGACCAAGGGAGAAGAGAGGTCATCTTATGAATAATTTCTCACATGTGGAAGAGGAGAGAAGCAACAAGCTTTCAGCTGTTTACTCTGATGATTCGGAGCTATCAGAAATGTTTGATGAGGTGCTGCTTTGCAAGGATGGTAAAAGTCCATCTTTTTTTTGTTTTAATCATGAACCATCACAGATTGCTGGCTCAAGAGGATCTAATGGAAAGACATCGCGTTCAAAGAAAGGTTCCAAGAAGGGGACGAGTCCAACTACAACGGTAGATTTATGGACCCTGCTAACTCAATGTGCACAGGCCGTGGCTAGCTATGACCAAAGGAATGCGAGTGAGATACTCAAGCAGATTAGGGACAACTCTTCACCTTTTGGCGATGGACTCCAGCGTTTAGCTCATTATGTTGCCAATGGGCTGGAGACGCGATTATTTGCTGGGACACCGAAGTATACACTCCTTCAGTCTTCATCTGCTGCTGATATGTTGAAAGCTTACAAAGTGTATATCACAGCATCTCCATTTTGGAGGATGACAAATTTCTTGGCCAACAGAACAATTCTAAAGCTAGTACAGAATGTGAGCAGTGTTCACATTATTGACTTTGGGATTTTCTATGGTTTCCAGTGGCCTTGCCTCATCCAACGTCTATCAGAAAGACCGGGTGGGCCACCAAAGCTTCGAATTACCGGAATTGATCTTCCTCAGCCGGGATTTAGGCCTACAGAAAGGGTCGAGGAGACGGGGTGGCGCCTTGCGAAGTACTGCAAGAGGTTTGGAGTGCCATTTGAGTACAATTTCCTTGCACAGAAATGGGAAACTATAAGACTTGAGGACCTCAAAATCGACATGGAAGAAGAAGTAACCGTGGTGAACTGTTTGTACAGATTGAAGAACCTCTCTGATGAAACTGTGACTGTGAACTGTCCAAGAGATGCTGTGTTGAAGTTGATCAGGAGGGTTAATCCAAACATCTTCATACATGGGGTAATCAATGGAACTTACAATGCACCGTTTTTTCTGACTCGGTTCAGGGAGGCACTCTTCCATTTCTCATCATTGTTTGACATGTTTGAGGCTACTGTACCGCGCGAAGATAAATATAGGTTGATGTTTGAGGAAGGGTTATTTGGACGGGATGCGGTTAATGTGATAGCGTGTGAGGGTGCAGAGAGGGTTGAAAGGCCAGAGACCTACAAGCAGTGGCAGGTTCGGAACCGCAGAGCAGGGTTCAAGCAACTTCCATTAGCGCCGGAACTCTCGAGTAGAGTGAAGGAAATGGTGAAGAAGGAATATCATAAAGATTTTGTGGTGGATGAGGATGGCAAGTGGGTTTTACAGGGATGGAAAGGGAGGATTCTTCATGCTGTTTCGTGTTGGGTTCCTGCTTAG 2121 0.4564 MISMDSLLENFPGSLNGCMFGNGPVSVFSNQNPGSGLNVEDSSSPSNHSELAADSGPSAAAAVGTTSSSNGESGESSKHSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPSSPHQVQGGFRDDNADPDDGFGGGTTSSEGYSSNTTDTSCESDLVNGAGDFESYFRQRALVDSPGNSSEVLDGVPLDPLRGTQPGALFSNGALDVIQWKVKPQVIQESVIRGSAATKGPREKRGHLMNNFSHVEEERSNKLSAVYSDDSELSEMFDEVLLCKDGKSPSFFCFNHEPSQIAGSRGSNGKTSRSKKGSKKGTSPTTTVDLWTLLTQCAQAVASYDQRNASEILKQIRDNSSPFGDGLQRLAHYVANGLETRLFAGTPKYTLLQSSSAADMLKAYKVYITASPFWRMTNFLANRTILKLVQNVSSVHIIDFGIFYGFQWPCLIQRLSERPGGPPKLRITGIDLPQPGFRPTERVEETGWRLAKYCKRFGVPFEYNFLAQKWETIRLEDLKIDMEEEVTVVNCLYRLKNLSDETVTVNCPRDAVLKLIRRVNPNIFIHGVINGTYNAPFFLTRFREALFHFSSLFDMFEATVPREDKYRLMFEEGLFGRDAVNVIACEGAERVERPETYKQWQVRNRRAGFKQLPLAPELSSRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILHAVSCWVPA* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0700 706 MobiDBLite consensus disorder prediction 129 170 - -
Lja3g0700 706 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 705 IPR005202 -
Lja3g0700 706 MobiDBLite consensus disorder prediction 306 330 - -
Lja3g0700 706 ProSiteProfiles GRAS family profile. 326 704 IPR005202 -
Lja3g0700 706 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 54 705 - -
Lja3g0700 706 MobiDBLite consensus disorder prediction 31 53 - -
Lja3g0700 706 MobiDBLite consensus disorder prediction 60 80 - -
Lja3g0700 706 Pfam GRAS domain family 337 703 IPR005202 -
Lja3g0700 706 MobiDBLite consensus disorder prediction 152 170 - -
Lja3g0700 706 MobiDBLite consensus disorder prediction 31 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0700 Lja-Chr3 6969662 6972600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0700 249 706 GRAS Transcription Factor Family AT1G07530 56.959 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g0700 GRAS 4.4e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0700 - - lja:Lj3g3v3213190.1 1363.21