Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0691 ATGAGTTTCGAAACGCAACCCGAAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTCGTCCACCTCTCCGCCGCCGGCAACATCGCCTGCCCCCACTGCGAAACCGGCTTCGTTGAAGAGATCCACCCCGACCAATCACCGAATCACGCTCACGCTCACGGTCTCAGCCCGTTACCTGAAGATCCCGTTTCTTCCCGGCGGCTAGGTTTCCGCCGCAGACGCCGCGACACCGGAAGCCGCTCCCCTTTCAACCCAGTCATCGTGCTTCGCGGAACCGCTGACGACGGAGCCGATCAAGAAGGAGGCGCCGCCGCCGCCTTCGAGCTTTACTACGACGACGGCGACGGTACCGGTCTCCGCCCACTTCCGCCGACGGTTTCAGAGTTTCTGCTGGGGTCTGGATTCGATCGGATGTTGGAGCAATTCTCGCAGATCGAGATGAACGGATTCGGCCGGCCGGAGAATCCGCCGGCTTCCAAGGCGGCGATCGAGTCGATGCCGACGGTGGAGATCGGGGAGATGGAGGCGTGTAACGAGGCGCAGTGCGCCGTTTGCAAGGAAGAATTCGAGCTGGGTGCGGAGGCGCGTGAGCTACCGTGCAAGCACATTTACCATTCCGATTGCATCGTTCCGTGGCTTTCGATGAGAAACTCGTGCCCGGTGTGCCGGCACGAGCTTCCTTCAGATCTGAACGCTAACCCTCTTAGGGCTCCAGGGCAAATCGACGAGGAAGCGATCGGGTTGACTATATGGAGGTTACCCGGCGGGGGATTCGCTGTGGGTAGATTCTCCGGTGGGCGGAGTGCTGGGGAGAGCCATTTGCCGATGGTGTACACGGAGATGGATGGTGGGGTGAATTCAAACCGTGCACCAAGAAGGGTTTCTCCGACGGTGAGCGGACACAGGGTTAGGGAACGACGTGGAATTGGCAGAGTCTTTCGGGGTTTCTTGTCATTCTTTGGAATTCGTGGTTCTTCAAGGTCAACTCGTTCTTCGTCTTCTTCAATTTCGTCTTTGTCATCTTCGTATTCTGGTAATTCTGAAGTGAGTACAACAGGCCTTAGCCAATTGAGTTCATCGCTCAATAGAAACTCGCGGAGACGACGCAATATGTCACAGCTGGTATTGGAAGATTGA 1140 0.5737 MSFETQPETASYWCYSCTRFVHLSAAGNIACPHCETGFVEEIHPDQSPNHAHAHGLSPLPEDPVSSRRLGFRRRRRDTGSRSPFNPVIVLRGTADDGADQEGGAAAAFELYYDDGDGTGLRPLPPTVSEFLLGSGFDRMLEQFSQIEMNGFGRPENPPASKAAIESMPTVEIGEMEACNEAQCAVCKEEFELGAEARELPCKHIYHSDCIVPWLSMRNSCPVCRHELPSDLNANPLRAPGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHLPMVYTEMDGGVNSNRAPRRVSPTVSGHRVRERRGIGRVFRGFLSFFGIRGSSRSTRSSSSSISSLSSSYSGNSEVSTTGLSQLSSSLNRNSRRRRNMSQLVLED* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0691 379 Pfam Ring finger domain 182 224 IPR001841 -
Lja3g0691 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 230 IPR013083 -
Lja3g0691 379 PANTHER OS05G0110000 PROTEIN 8 309 - -
Lja3g0691 379 CDD RING-H2_RNF126_like 182 224 - -
Lja3g0691 379 MobiDBLite consensus disorder prediction 45 87 - -
Lja3g0691 379 MobiDBLite consensus disorder prediction 325 370 - -
Lja3g0691 379 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Lja3g0691 379 SMART ring_2 183 223 IPR001841 -
Lja3g0691 379 MobiDBLite consensus disorder prediction 325 379 - -
Lja3g0691 379 Pfam Protein of unknown function (DUF1117) 247 345 IPR010543 -
Lja3g0691 379 SUPERFAMILY RING/U-box 163 234 - -
Lja3g0691 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 309 - -
Lja3g0691 379 MobiDBLite consensus disorder prediction 283 303 - -
Lja3g0691 379 ProSiteProfiles Zinc finger RING-type profile. 183 224 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0691 Lja-Chr3 6865325 6867388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0691 122 230 C3H Transcription Factor Family AT5G01980 45.872 2.23e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0691 - - gmx:100804867 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0691 3 6865325 6867388 Lja3g0691 3 6865325 6867388 ECH
Lja3g0691 3 6865325 6867388 Lja6g0511 6 12223262 12225387 ECH
Lja3g2754 3 40705203 40707292 Lja3g0691 3 6865325 6867388 PCT