Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0690 ATGGGGGAAGAGGTGAGGATGATGGATGAAGAGCGTTTGATGGAGTGGGAGAAGGGTCTCCCAAGCGTTCACGATCTAACTCCGCTTTCTCAGCCGCTGATCCCGCCGGAGCTCGCAACCGCCTTCAGCATCTCGCCGGAGCCCCGCCGCACACTCCTCGACGTCAACCGCGCATCCCGCAACACGCTCTCCATCCTCCGCAGCGGTGGAGCCCCACTCCAGGCTCTTTCCTCCTCCGACGAGGAGGGCGAGGGCGGAGGTGGCGGAGGTGAGGAGGACGACACCACCGATCGCGACGGGTCGGGTGGGTCAGGGTCACGGAAACAGAGGAAGGTGGATTGCGCGGCGGAGGAGGCTGACTCGGCGGTTCGGACGACGGATACGGCGACGCTGAAACGGCCGCGTCTGGTGTGGACACCGCAGCTGCATAAGCGGTTCGTGGACGTGGTGGCGCACCTCGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGTTGATGAACGTGGAAGGGTTGACCCGAGAGAACGTGGCGAGTCATCTTCAGAAGTACCGGCTGTACTTGAAGAGGATGCAGGGTCTCTCCAACGAGGGTCCTTCTTCCTCCGATCATCTCTTTGCTTCCACCCCTGTTCCTCAGAGCTTGCATGATTCTGCTGCTGCTGCTGTTGCTGCAACTGCACATTCAAATTCGCATTCACAAACACATTCCCATTCACATGGACATGGGAATTCTTCTCACCTTCCTGTTCCGATTCCCATGCCTTATCCACCTCCGATGATGTCTATGCCCTTCCATGGTATGCCTCACCTGCATCATGGCCATGGACACATGGGTATGCCGCTTCCTTCTTCCTCTGCCACCTCCTCTTATCGCTCTCAATACCCCTTTAACATGTTGCACCAGAGGGATTGGCCTCACCCTCATCTTGCTCCTAATGATAATAAATGA 951 0.5773 MGEEVRMMDEERLMEWEKGLPSVHDLTPLSQPLIPPELATAFSISPEPRRTLLDVNRASRNTLSILRSGGAPLQALSSSDEEGEGGGGGGEEDDTTDRDGSGGSGSRKQRKVDCAAEEADSAVRTTDTATLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHDSAAAAVAATAHSNSHSQTHSHSHGHGNSSHLPVPIPMPYPPPMMSMPFHGMPHLHHGHGHMGMPLPSSSATSSYRSQYPFNMLHQRDWPHPHLAPNDNK* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0690 316 Pfam Myb-like DNA-binding domain 137 185 IPR001005 -
Lja3g0690 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 138 189 IPR017930 -
Lja3g0690 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Lja3g0690 316 SUPERFAMILY Homeodomain-like 130 190 IPR009057 -
Lja3g0690 316 MobiDBLite consensus disorder prediction 91 120 - -
Lja3g0690 316 MobiDBLite consensus disorder prediction 216 252 - -
Lja3g0690 316 MobiDBLite consensus disorder prediction 224 244 - -
Lja3g0690 316 Gene3D - 130 192 - -
Lja3g0690 316 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 - -
Lja3g0690 316 MobiDBLite consensus disorder prediction 66 128 - -
Lja3g0690 316 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 307 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0690 Lja-Chr3 6845579 6848225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0690 1 217 G2-like Transcription Factor Family AT3G46640 60.581 3.94e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja3g0690 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0690 - - aprc:113858844 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0690 3 6845579 6848225 Lja3g0690 3 6845579 6848225 ECH