Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g0682 ATGGAGCCTGATCATGATCAAGGTGATAATGAACAAGGTGCAAGTAAGGTGACTCCCCCCAAGTCCTATGAGTGCAACTTCTGCAAGAGGGGCTTCTCTAATGCACAAGCACTAGGTGGCCACATGAACATCCATAGGAAAGACAAAGCCAAGCTCAAACAACAATCTTCAAATCAAACTCAACCATCTTTGGAAGTTCATCATCAGAAGAACCCTGAATTAGAAGAACAGAACAAACCAAACTTGAATTTGAAGTATCATCATCAACAAGACCATGTTCTTCTTCACATGAGGCAGCTTCCACTTTTTGCTGAATCACCAATTAGCAGTGGTGAAGCACAAATATTACCACAAGCTCAAATTCAAGGGGAAGTTCAAGTTGTTACGTCAGAAGGGGCTTTAAGCCAAGGTTCCTCCTCTGATTTAGACCTTGAACTGAGACTAGGGCCAGAGCCATCATCATCAGGTGCAACTGGTACCAGAAAATTCTTTTGA 495 0.4263 MEPDHDQGDNEQGASKVTPPKSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNQTQPSLEVHHQKNPELEEQNKPNLNLKYHHQQDHVLLHMRQLPLFAESPISSGEAQILPQAQIQGEVQVVTSEGALSQGSSSDLDLELRLGPEPSSSGATGTRKFF* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g0682 164 MobiDBLite consensus disorder prediction 39 79 - -
Lja3g0682 164 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
Lja3g0682 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 98 - -
Lja3g0682 164 PANTHER OS07G0101800 PROTEIN 7 98 - -
Lja3g0682 164 MobiDBLite consensus disorder prediction 132 164 - -
Lja3g0682 164 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g0682 164 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Lja3g0682 164 Gene3D Classic Zinc Finger 10 92 - -
Lja3g0682 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Lja3g0682 164 Pfam C2H2-type zinc finger 23 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g0682 Lja-Chr3 6802786 6803515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g0682 23 152 C2H2 Transcription Factor Family AT3G53820 36.879 5.59e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g0682 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g0682 - - gmx:100527724 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g0682 3 6802786 6803515 Lja3g0682 3 6802786 6803515 ECH